miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 75071 0.66 0.976432
Target:  5'- cCGGGCGgcGACGUcgaggcgccguuucgGGGGCUCGacgucGCCGc -3'
miRNA:   3'- -GUCUGCuuCUGCA---------------UCUCGAGC-----CGGUc -5'
9126 3' -54.4 NC_002512.2 + 147749 0.66 0.975451
Target:  5'- gCGGACcGAGACGUGcgccAGCgCGGCCGu -3'
miRNA:   3'- -GUCUGcUUCUGCAUc---UCGaGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 97822 0.66 0.975451
Target:  5'- gGGACGcGGA-GUAGAGggCGGCgCGGg -3'
miRNA:   3'- gUCUGCuUCUgCAUCUCgaGCCG-GUC- -5'
9126 3' -54.4 NC_002512.2 + 108417 0.66 0.975451
Target:  5'- aGGACGggGACGgcG-GCg-GGCgCGGg -3'
miRNA:   3'- gUCUGCuuCUGCauCuCGagCCG-GUC- -5'
9126 3' -54.4 NC_002512.2 + 140938 0.66 0.975451
Target:  5'- gGGACGgcGACGaGGcggaaggggggcGGCUCGGUCGc -3'
miRNA:   3'- gUCUGCuuCUGCaUC------------UCGAGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 9035 0.66 0.973923
Target:  5'- gCGGACGAcguAGACGcGacacagcccgucgacGAGCaCGGCCAGc -3'
miRNA:   3'- -GUCUGCU---UCUGCaU---------------CUCGaGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 186715 0.66 0.972867
Target:  5'- -cGGCGGguuGGGCGaGGAG-UCGGCCAa -3'
miRNA:   3'- guCUGCU---UCUGCaUCUCgAGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 193881 0.66 0.972867
Target:  5'- gCGGugGAcGACGcgGGAGCgggucgccgCGGUCGGc -3'
miRNA:   3'- -GUCugCUuCUGCa-UCUCGa--------GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 219491 0.66 0.972867
Target:  5'- gGGGCGGgucAGACGaGGAuGCU-GGCCGGc -3'
miRNA:   3'- gUCUGCU---UCUGCaUCU-CGAgCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 166473 0.66 0.972867
Target:  5'- aGGGCGggGACGgcgGGAccGCg-GGUCGGa -3'
miRNA:   3'- gUCUGCuuCUGCa--UCU--CGagCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 112744 0.66 0.972867
Target:  5'- gCAcGCgGAAGGCGgAGAGC-CGGCCGu -3'
miRNA:   3'- -GUcUG-CUUCUGCaUCUCGaGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 130603 0.66 0.972867
Target:  5'- gAGGCGGaggAGACGaAGAGCcCGGCgCGa -3'
miRNA:   3'- gUCUGCU---UCUGCaUCUCGaGCCG-GUc -5'
9126 3' -54.4 NC_002512.2 + 103346 0.66 0.972867
Target:  5'- gGGGCGucGACGaguccGGGGCcgCGGUCGGg -3'
miRNA:   3'- gUCUGCuuCUGCa----UCUCGa-GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 21307 0.66 0.972867
Target:  5'- cCGGACccgcugcGCGUcGAGCUCGGCCuGa -3'
miRNA:   3'- -GUCUGcuuc---UGCAuCUCGAGCCGGuC- -5'
9126 3' -54.4 NC_002512.2 + 53689 0.66 0.972598
Target:  5'- aCAGGCu--GGCGUacgccgaGGAGCuggagaagcugUCGGCCAGg -3'
miRNA:   3'- -GUCUGcuuCUGCA-------UCUCG-----------AGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 31497 0.66 0.972328
Target:  5'- aGGACGAGGAUGguccAGAGCcugaucacggaGGCCAc -3'
miRNA:   3'- gUCUGCUUCUGCa---UCUCGag---------CCGGUc -5'
9126 3' -54.4 NC_002512.2 + 130514 0.66 0.972055
Target:  5'- -cGACGcuGGCGgAGAGCUCGggucgcgggaacauGCCGGa -3'
miRNA:   3'- guCUGCuuCUGCaUCUCGAGC--------------CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 15458 0.67 0.970093
Target:  5'- gUAGACGggGACGcGGucCUCGGgCGc -3'
miRNA:   3'- -GUCUGCuuCUGCaUCucGAGCCgGUc -5'
9126 3' -54.4 NC_002512.2 + 8096 0.67 0.970093
Target:  5'- -cGuCGccGGCGUAGAGCagGcGCCAGg -3'
miRNA:   3'- guCuGCuuCUGCAUCUCGagC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 118853 0.67 0.970093
Target:  5'- cCAGAUGGuccuGGGCauccUGGAGUaCGGCCGGg -3'
miRNA:   3'- -GUCUGCU----UCUGc---AUCUCGaGCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.