miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 5' -60.1 NC_002512.2 + 207659 0.66 0.840671
Target:  5'- cGGCCGUgGUGG-CguCC-CGGGCUCu- -3'
miRNA:   3'- -CCGGCG-CAUCaGguGGuGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 108296 0.66 0.840671
Target:  5'- cGGCUugaugagcucgGUGUGGUCCAUgGCGGcGCgCGg -3'
miRNA:   3'- -CCGG-----------CGCAUCAGGUGgUGCC-CGaGCa -5'
9126 5' -60.1 NC_002512.2 + 73612 0.66 0.840671
Target:  5'- gGGCCacuCGgagaAGUCgaaggCGCCGcCGGGCUCGUa -3'
miRNA:   3'- -CCGGc--GCa---UCAG-----GUGGU-GCCCGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 113664 0.66 0.840671
Target:  5'- cGGCCGCGagGGUgCG-CGCGGG-UCGg -3'
miRNA:   3'- -CCGGCGCa-UCAgGUgGUGCCCgAGCa -5'
9126 5' -60.1 NC_002512.2 + 95558 0.66 0.832932
Target:  5'- cGGCCGCGgcgAGUCCGuCgGCGccGGCccCGg -3'
miRNA:   3'- -CCGGCGCa--UCAGGU-GgUGC--CCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 127383 0.66 0.832932
Target:  5'- cGGCCGCGacucCCGCgGCGGGaaCGa -3'
miRNA:   3'- -CCGGCGCaucaGGUGgUGCCCgaGCa -5'
9126 5' -60.1 NC_002512.2 + 156524 0.66 0.832932
Target:  5'- gGGgCGCGggGGUCCgGCgGCGGGaaCGUg -3'
miRNA:   3'- -CCgGCGCa-UCAGG-UGgUGCCCgaGCA- -5'
9126 5' -60.1 NC_002512.2 + 160154 0.66 0.832932
Target:  5'- cGCCGCGUgucaAGUCUAUCAUccGCUCGc -3'
miRNA:   3'- cCGGCGCA----UCAGGUGGUGccCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 123210 0.66 0.832932
Target:  5'- aGCUGCccgAGgacgucgCCGCCcaguGCGGGCUCGa -3'
miRNA:   3'- cCGGCGca-UCa------GGUGG----UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 130766 0.66 0.832932
Target:  5'- cGGCCGUGcgcgaucucuUGGagCgGCC-CGGGCUCGc -3'
miRNA:   3'- -CCGGCGC----------AUCa-GgUGGuGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 44548 0.66 0.832932
Target:  5'- uGGCgGCGg---CCACC-CGGGCggCGa -3'
miRNA:   3'- -CCGgCGCaucaGGUGGuGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 4146 0.66 0.829791
Target:  5'- cGGCCGCGccccgacugagcgAGU-CGCCGCG-GCUCGc -3'
miRNA:   3'- -CCGGCGCa------------UCAgGUGGUGCcCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 10465 0.66 0.825032
Target:  5'- aGGCCGCcg---CCGCCcCGGGCgugggCGUc -3'
miRNA:   3'- -CCGGCGcaucaGGUGGuGCCCGa----GCA- -5'
9126 5' -60.1 NC_002512.2 + 129758 0.66 0.825032
Target:  5'- cGCCGCc--GUCCACgACGGugacggagaGCUCGUc -3'
miRNA:   3'- cCGGCGcauCAGGUGgUGCC---------CGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 171570 0.66 0.825032
Target:  5'- aGuuGCGUcGUCCGCaaauccaacgGCGGGCUCu- -3'
miRNA:   3'- cCggCGCAuCAGGUGg---------UGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 186491 0.66 0.825032
Target:  5'- cGCCGaGUucGUCCACUACGcGGC-CGUc -3'
miRNA:   3'- cCGGCgCAu-CAGGUGGUGC-CCGaGCA- -5'
9126 5' -60.1 NC_002512.2 + 126201 0.67 0.820217
Target:  5'- cGCCGCG---UCCGCCGCccucugcgacgucgaGGcGCUCGUg -3'
miRNA:   3'- cCGGCGCaucAGGUGGUG---------------CC-CGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 28056 0.67 0.816976
Target:  5'- cGGCCGCGgaaggAG-CC-CC-CGGGCgCGg -3'
miRNA:   3'- -CCGGCGCa----UCaGGuGGuGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 112192 0.67 0.816976
Target:  5'- cGCCGCa-GGUgCGCCACGcaGCUCGUc -3'
miRNA:   3'- cCGGCGcaUCAgGUGGUGCc-CGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 129279 0.67 0.816976
Target:  5'- aGCUGuCGUGcGUCgaGCCGCGGGCgCGg -3'
miRNA:   3'- cCGGC-GCAU-CAGg-UGGUGCCCGaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.