miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9129 3' -55.3 NC_002512.2 + 99272 0.66 0.969162
Target:  5'- --aCGC--CGGACgCGggGUCGAGCAg -3'
miRNA:   3'- uugGCGaaGCCUG-GCuuCGGCUUGUg -5'
9129 3' -55.3 NC_002512.2 + 133887 0.66 0.969162
Target:  5'- -uCCGCcuggCGGuCgCGgcGCCGGACGCc -3'
miRNA:   3'- uuGGCGaa--GCCuG-GCuuCGGCUUGUG- -5'
9129 3' -55.3 NC_002512.2 + 228118 0.66 0.969162
Target:  5'- cGGCCGCaacgUCGuGCUGGGcGCCGAcggGCGCg -3'
miRNA:   3'- -UUGGCGa---AGCcUGGCUU-CGGCU---UGUG- -5'
9129 3' -55.3 NC_002512.2 + 15646 0.66 0.969162
Target:  5'- cGGCCGCgggCGGcgaGCCGAcgAGCCGccuGACGu -3'
miRNA:   3'- -UUGGCGaa-GCC---UGGCU--UCGGC---UUGUg -5'
9129 3' -55.3 NC_002512.2 + 110265 0.66 0.969162
Target:  5'- cGCCGCgcugGGGCgGGAGgCGAGCGg -3'
miRNA:   3'- uUGGCGaag-CCUGgCUUCgGCUUGUg -5'
9129 3' -55.3 NC_002512.2 + 36885 0.66 0.969162
Target:  5'- -cCCGUUUCGGACUGAcucGUCGugcguuCACa -3'
miRNA:   3'- uuGGCGAAGCCUGGCUu--CGGCuu----GUG- -5'
9129 3' -55.3 NC_002512.2 + 92691 0.66 0.969162
Target:  5'- cGCCGCccaccgggCGGACCGAcgacGCCGuACGg -3'
miRNA:   3'- uUGGCGaa------GCCUGGCUu---CGGCuUGUg -5'
9129 3' -55.3 NC_002512.2 + 114368 0.66 0.96857
Target:  5'- aAGCCGgUUCGGACCcggcccuGGAGaCCGGcgacccgccacucGCGCu -3'
miRNA:   3'- -UUGGCgAAGCCUGG-------CUUC-GGCU-------------UGUG- -5'
9129 3' -55.3 NC_002512.2 + 96407 0.66 0.966121
Target:  5'- cGGCgGCcUCGGACCGA-GCCu--CGCu -3'
miRNA:   3'- -UUGgCGaAGCCUGGCUuCGGcuuGUG- -5'
9129 3' -55.3 NC_002512.2 + 92655 0.66 0.966121
Target:  5'- -cCCGCg-CGGAuCCGGGacggccgcccgcGCCGGGCGCg -3'
miRNA:   3'- uuGGCGaaGCCU-GGCUU------------CGGCUUGUG- -5'
9129 3' -55.3 NC_002512.2 + 158232 0.66 0.966121
Target:  5'- gGGCCGCccaagUUCGGcUCGGuGGCCGAguACACc -3'
miRNA:   3'- -UUGGCG-----AAGCCuGGCU-UCGGCU--UGUG- -5'
9129 3' -55.3 NC_002512.2 + 212999 0.66 0.966121
Target:  5'- cGCCGCggccgUCGGGCCcGggGCCc----- -3'
miRNA:   3'- uUGGCGa----AGCCUGG-CuuCGGcuugug -5'
9129 3' -55.3 NC_002512.2 + 219862 0.66 0.966121
Target:  5'- gGAUCGCggaCGGgugacgagGCCGggGUCGGAgACg -3'
miRNA:   3'- -UUGGCGaa-GCC--------UGGCuuCGGCUUgUG- -5'
9129 3' -55.3 NC_002512.2 + 225729 0.66 0.964199
Target:  5'- gAGCCGCggcgacucgcucagUCGGGgCGcGGCCgGGACAUg -3'
miRNA:   3'- -UUGGCGa-------------AGCCUgGCuUCGG-CUUGUG- -5'
9129 3' -55.3 NC_002512.2 + 138814 0.66 0.962876
Target:  5'- gAACCGCUccCGGugCGAccuccAGgCGGACGa -3'
miRNA:   3'- -UUGGCGAa-GCCugGCU-----UCgGCUUGUg -5'
9129 3' -55.3 NC_002512.2 + 8388 0.66 0.962876
Target:  5'- cGCCGCgcaGGAaaauaGGAcGCCGAGCGCc -3'
miRNA:   3'- uUGGCGaagCCUgg---CUU-CGGCUUGUG- -5'
9129 3' -55.3 NC_002512.2 + 4594 0.66 0.962876
Target:  5'- aGGCgGCgccgCGGGCCGcGAGaCGGACGCc -3'
miRNA:   3'- -UUGgCGaa--GCCUGGC-UUCgGCUUGUG- -5'
9129 3' -55.3 NC_002512.2 + 56298 0.66 0.962876
Target:  5'- cGACaUGCUggCGGcGCCGGAGCUcGGCGCa -3'
miRNA:   3'- -UUG-GCGAa-GCC-UGGCUUCGGcUUGUG- -5'
9129 3' -55.3 NC_002512.2 + 97318 0.66 0.962876
Target:  5'- uGGCCGCgccc-GCCGggGUCGAGgGCg -3'
miRNA:   3'- -UUGGCGaagccUGGCuuCGGCUUgUG- -5'
9129 3' -55.3 NC_002512.2 + 70928 0.66 0.962876
Target:  5'- gAACCGC-UCGccgccguugcuGACCGAgaGGCCGccGGCGCc -3'
miRNA:   3'- -UUGGCGaAGC-----------CUGGCU--UCGGC--UUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.