Results 1 - 20 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9129 | 3' | -55.3 | NC_002512.2 | + | 36885 | 0.66 | 0.969162 |
Target: 5'- -cCCGUUUCGGACUGAcucGUCGugcguuCACa -3' miRNA: 3'- uuGGCGAAGCCUGGCUu--CGGCuu----GUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 92691 | 0.66 | 0.969162 |
Target: 5'- cGCCGCccaccgggCGGACCGAcgacGCCGuACGg -3' miRNA: 3'- uUGGCGaa------GCCUGGCUu---CGGCuUGUg -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 110265 | 0.66 | 0.969162 |
Target: 5'- cGCCGCgcugGGGCgGGAGgCGAGCGg -3' miRNA: 3'- uUGGCGaag-CCUGgCUUCgGCUUGUg -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 15646 | 0.66 | 0.969162 |
Target: 5'- cGGCCGCgggCGGcgaGCCGAcgAGCCGccuGACGu -3' miRNA: 3'- -UUGGCGaa-GCC---UGGCU--UCGGC---UUGUg -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 228118 | 0.66 | 0.969162 |
Target: 5'- cGGCCGCaacgUCGuGCUGGGcGCCGAcggGCGCg -3' miRNA: 3'- -UUGGCGa---AGCcUGGCUU-CGGCU---UGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 133887 | 0.66 | 0.969162 |
Target: 5'- -uCCGCcuggCGGuCgCGgcGCCGGACGCc -3' miRNA: 3'- uuGGCGaa--GCCuG-GCuuCGGCUUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 99272 | 0.66 | 0.969162 |
Target: 5'- --aCGC--CGGACgCGggGUCGAGCAg -3' miRNA: 3'- uugGCGaaGCCUG-GCuuCGGCUUGUg -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 114368 | 0.66 | 0.96857 |
Target: 5'- aAGCCGgUUCGGACCcggcccuGGAGaCCGGcgacccgccacucGCGCu -3' miRNA: 3'- -UUGGCgAAGCCUGG-------CUUC-GGCU-------------UGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 212999 | 0.66 | 0.966121 |
Target: 5'- cGCCGCggccgUCGGGCCcGggGCCc----- -3' miRNA: 3'- uUGGCGa----AGCCUGG-CuuCGGcuugug -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 92655 | 0.66 | 0.966121 |
Target: 5'- -cCCGCg-CGGAuCCGGGacggccgcccgcGCCGGGCGCg -3' miRNA: 3'- uuGGCGaaGCCU-GGCUU------------CGGCUUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 219862 | 0.66 | 0.966121 |
Target: 5'- gGAUCGCggaCGGgugacgagGCCGggGUCGGAgACg -3' miRNA: 3'- -UUGGCGaa-GCC--------UGGCuuCGGCUUgUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 158232 | 0.66 | 0.966121 |
Target: 5'- gGGCCGCccaagUUCGGcUCGGuGGCCGAguACACc -3' miRNA: 3'- -UUGGCG-----AAGCCuGGCU-UCGGCU--UGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 96407 | 0.66 | 0.966121 |
Target: 5'- cGGCgGCcUCGGACCGA-GCCu--CGCu -3' miRNA: 3'- -UUGgCGaAGCCUGGCUuCGGcuuGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 225729 | 0.66 | 0.964199 |
Target: 5'- gAGCCGCggcgacucgcucagUCGGGgCGcGGCCgGGACAUg -3' miRNA: 3'- -UUGGCGa-------------AGCCUgGCuUCGG-CUUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 70928 | 0.66 | 0.962876 |
Target: 5'- gAACCGC-UCGccgccguugcuGACCGAgaGGCCGccGGCGCc -3' miRNA: 3'- -UUGGCGaAGC-----------CUGGCU--UCGGC--UUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 8388 | 0.66 | 0.962876 |
Target: 5'- cGCCGCgcaGGAaaauaGGAcGCCGAGCGCc -3' miRNA: 3'- uUGGCGaagCCUgg---CUU-CGGCUUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 138814 | 0.66 | 0.962876 |
Target: 5'- gAACCGCUccCGGugCGAccuccAGgCGGACGa -3' miRNA: 3'- -UUGGCGAa-GCCugGCU-----UCgGCUUGUg -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 4594 | 0.66 | 0.962876 |
Target: 5'- aGGCgGCgccgCGGGCCGcGAGaCGGACGCc -3' miRNA: 3'- -UUGgCGaa--GCCUGGC-UUCgGCUUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 56298 | 0.66 | 0.962876 |
Target: 5'- cGACaUGCUggCGGcGCCGGAGCUcGGCGCa -3' miRNA: 3'- -UUG-GCGAa-GCC-UGGCUUCGGcUUGUG- -5' |
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9129 | 3' | -55.3 | NC_002512.2 | + | 97318 | 0.66 | 0.962876 |
Target: 5'- uGGCCGCgccc-GCCGggGUCGAGgGCg -3' miRNA: 3'- -UUGGCGaagccUGGCuuCGGCUUgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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