miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9129 5' -63.8 NC_002512.2 + 199006 0.65 0.733392
Target:  5'- cGUACGUCUCGauGGCCuccugcgucaggaaCCGCGgCgCGUCGa -3'
miRNA:   3'- -CGUGCAGGGC--CCGG--------------GGCGC-GaGCAGC- -5'
9129 5' -63.8 NC_002512.2 + 112946 0.66 0.727122
Target:  5'- -gGCGcCCCGGucgaGCCCCGag-UCGUCGg -3'
miRNA:   3'- cgUGCaGGGCC----CGGGGCgcgAGCAGC- -5'
9129 5' -63.8 NC_002512.2 + 126676 0.66 0.727122
Target:  5'- aGCAuCGUCgaGcGGaUCCUGCGCUaCGUCGa -3'
miRNA:   3'- -CGU-GCAGggC-CC-GGGGCGCGA-GCAGC- -5'
9129 5' -63.8 NC_002512.2 + 108539 0.66 0.727122
Target:  5'- cGC-CGUCCaacGGCCCCGcCGC-CGgagCGa -3'
miRNA:   3'- -CGuGCAGGgc-CCGGGGC-GCGaGCa--GC- -5'
9129 5' -63.8 NC_002512.2 + 214917 0.66 0.727121
Target:  5'- uGCGCGUCcaCCGcGGCCgCG-GCuUCGUCc -3'
miRNA:   3'- -CGUGCAG--GGC-CCGGgGCgCG-AGCAGc -5'
9129 5' -63.8 NC_002512.2 + 149169 0.66 0.727121
Target:  5'- uGC-CGcCCgCGGGCCCgCGCGC-CcUCGc -3'
miRNA:   3'- -CGuGCaGG-GCCCGGG-GCGCGaGcAGC- -5'
9129 5' -63.8 NC_002512.2 + 192148 0.66 0.726223
Target:  5'- gGCGCGggccagaUCCCGcGGCCCCuGCcCUCG-Cu -3'
miRNA:   3'- -CGUGC-------AGGGC-CCGGGG-CGcGAGCaGc -5'
9129 5' -63.8 NC_002512.2 + 95062 0.66 0.724424
Target:  5'- cGCGCGUugagccgaaagaCCCGGaGCUCCGUgaaguagaccucgaGCUCGgCGa -3'
miRNA:   3'- -CGUGCA------------GGGCC-CGGGGCG--------------CGAGCaGC- -5'
9129 5' -63.8 NC_002512.2 + 70740 0.66 0.723523
Target:  5'- aGCGCG-CCCGGccGCCucacuuggagcggCCGCGCUucuggggcagauccCGUCGu -3'
miRNA:   3'- -CGUGCaGGGCC--CGG-------------GGCGCGA--------------GCAGC- -5'
9129 5' -63.8 NC_002512.2 + 130287 0.66 0.718107
Target:  5'- aGCGCGgggCCCGGGacgugccguaCgCCGUGUUCGgcuUCGg -3'
miRNA:   3'- -CGUGCa--GGGCCC----------GgGGCGCGAGC---AGC- -5'
9129 5' -63.8 NC_002512.2 + 129301 0.66 0.718107
Target:  5'- gGCGCGguuuccccaCCCGaGcGCCCgGCGCUucugCGUCa -3'
miRNA:   3'- -CGUGCa--------GGGC-C-CGGGgCGCGA----GCAGc -5'
9129 5' -63.8 NC_002512.2 + 82708 0.66 0.718107
Target:  5'- uGCGCGgCgCGGG-CCCGCGUuccggCGUCu -3'
miRNA:   3'- -CGUGCaGgGCCCgGGGCGCGa----GCAGc -5'
9129 5' -63.8 NC_002512.2 + 105101 0.66 0.718107
Target:  5'- aGCugGacccggaCCCGGGaCUgCGCGgUCGUCu -3'
miRNA:   3'- -CGugCa------GGGCCC-GGgGCGCgAGCAGc -5'
9129 5' -63.8 NC_002512.2 + 22358 0.66 0.718107
Target:  5'- cGCAgCGggaggaCGcGGCCCCGUcCUCGUCGu -3'
miRNA:   3'- -CGU-GCagg---GC-CCGGGGCGcGAGCAGC- -5'
9129 5' -63.8 NC_002512.2 + 222181 0.66 0.718106
Target:  5'- cUAC-UCCCGGGCCgCG-GCcggCGUCGu -3'
miRNA:   3'- cGUGcAGGGCCCGGgGCgCGa--GCAGC- -5'
9129 5' -63.8 NC_002512.2 + 173704 0.66 0.718106
Target:  5'- cGC-CGUCCUGGGaCUgcccgcgaCCGUGCUCGg-- -3'
miRNA:   3'- -CGuGCAGGGCCC-GG--------GGCGCGAGCagc -5'
9129 5' -63.8 NC_002512.2 + 139408 0.66 0.718106
Target:  5'- uGCACGUCCuCGuuGGUCaUUGCGCUCGa-- -3'
miRNA:   3'- -CGUGCAGG-GC--CCGG-GGCGCGAGCagc -5'
9129 5' -63.8 NC_002512.2 + 186407 0.66 0.718106
Target:  5'- cCGCGUCCUcGGCUuccacgCCGUGCUCGgcCGg -3'
miRNA:   3'- cGUGCAGGGcCCGG------GGCGCGAGCa-GC- -5'
9129 5' -63.8 NC_002512.2 + 101689 0.66 0.718106
Target:  5'- --cCGUCCCcGGUCCCGCcggcggcccGCUCGgCGa -3'
miRNA:   3'- cguGCAGGGcCCGGGGCG---------CGAGCaGC- -5'
9129 5' -63.8 NC_002512.2 + 105100 0.66 0.71539
Target:  5'- -gACGUgucucCCCGGGUCCCG-GCagcccucgcacccgUCGUCGc -3'
miRNA:   3'- cgUGCA-----GGGCCCGGGGCgCG--------------AGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.