miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 194839 0.74 0.204146
Target:  5'- uGCUGUCCcggCCCgUGCGGaCCCCGAuCGg -3'
miRNA:   3'- gCGGCAGGa--GGGgGCGCC-GGGGCU-GC- -5'
9131 3' -67.1 NC_002512.2 + 134176 0.74 0.204146
Target:  5'- aGCCGUCUUCCCCuCcCGGCCCCc--- -3'
miRNA:   3'- gCGGCAGGAGGGG-GcGCCGGGGcugc -5'
9131 3' -67.1 NC_002512.2 + 122779 0.74 0.208699
Target:  5'- gGUCGU-CUCCCCCGagggcgccgGGCCCUGGCGg -3'
miRNA:   3'- gCGGCAgGAGGGGGCg--------CCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6170 0.74 0.208699
Target:  5'- gGUCGUCCUCCCCgUGCGaGUCgCCGGCc -3'
miRNA:   3'- gCGGCAGGAGGGG-GCGC-CGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 182068 0.74 0.208699
Target:  5'- gCGCCGaCCUCagCCGCGGCUCCGGgGu -3'
miRNA:   3'- -GCGGCaGGAGggGGCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 81413 0.73 0.21334
Target:  5'- -cUCGUCCUCCCCgccguCGCGGCUCCGucccGCGg -3'
miRNA:   3'- gcGGCAGGAGGGG-----GCGCCGGGGC----UGC- -5'
9131 3' -67.1 NC_002512.2 + 222436 0.73 0.21334
Target:  5'- gCGCCGcggCUUCCCCCG-GGCCgCGGCc -3'
miRNA:   3'- -GCGGCa--GGAGGGGGCgCCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 73364 0.73 0.21334
Target:  5'- cCGCCG-CCggaCCCCCGC-GCCCCGcCGc -3'
miRNA:   3'- -GCGGCaGGa--GGGGGCGcCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 98999 0.73 0.218069
Target:  5'- gGCCGgCCU-CUgCGCGGCCCCGAUa -3'
miRNA:   3'- gCGGCaGGAgGGgGCGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 136632 0.73 0.218069
Target:  5'- uGCUGUacaaCCUCCCCCGCuggaccguucaGGCCgUGACGa -3'
miRNA:   3'- gCGGCA----GGAGGGGGCG-----------CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 126421 0.73 0.218069
Target:  5'- aCGCCGccucUCCUCCuCCCGCccGGCCggCGACGg -3'
miRNA:   3'- -GCGGC----AGGAGG-GGGCG--CCGGg-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 118597 0.73 0.222887
Target:  5'- gGCgGcCCUCuCCCCGCGGCggCCGACa -3'
miRNA:   3'- gCGgCaGGAG-GGGGCGCCGg-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 74283 0.73 0.232796
Target:  5'- gCGCCG-CacgUCCCCGUGGUCCuCGACGg -3'
miRNA:   3'- -GCGGCaGga-GGGGGCGCCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 222370 0.73 0.232796
Target:  5'- gGCCGcCUUCCCCgGCgGGCUCUGGCu -3'
miRNA:   3'- gCGGCaGGAGGGGgCG-CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 205175 0.73 0.232796
Target:  5'- aCGCCGcgucucCCUCgCCCGCGuCCUCGACGa -3'
miRNA:   3'- -GCGGCa-----GGAGgGGGCGCcGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 139200 0.73 0.232796
Target:  5'- aCGCCGUcgaggaccuggcCCUggCCgCCGCGGCCgCCGACu -3'
miRNA:   3'- -GCGGCA------------GGA--GGgGGCGCCGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 74416 0.73 0.237888
Target:  5'- gGCCGUCuCUUCUucgaCCGaCGGUCCCGGCGc -3'
miRNA:   3'- gCGGCAG-GAGGG----GGC-GCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 122252 0.73 0.237888
Target:  5'- aGCUcgGUCUUCCCCgGCGGCCgCGGgGa -3'
miRNA:   3'- gCGG--CAGGAGGGGgCGCCGGgGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 11667 0.73 0.237888
Target:  5'- gCGCCG-CggCCCgCCGCGGCCCgaGGCGg -3'
miRNA:   3'- -GCGGCaGgaGGG-GGCGCCGGGg-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 137234 0.73 0.243073
Target:  5'- gGCCGUCCcggaUCCgCGCgGGUCCCGGCGc -3'
miRNA:   3'- gCGGCAGGa---GGGgGCG-CCGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.