miRNA display CGI


Results 61 - 80 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 77086 0.66 0.996318
Target:  5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3'
miRNA:   3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 74875 0.66 0.994309
Target:  5'- cCGCaccCG-GGACGAcGGGCGACGGAUc -3'
miRNA:   3'- -GCGca-GCuUCUGCU-UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 123916 0.66 0.996318
Target:  5'- aGCGg-GAAGGu--GGACGGCGGGCu -3'
miRNA:   3'- gCGCagCUUCUgcuUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 32436 0.66 0.995059
Target:  5'- aGCGggCGAGGGaGAAGGaGuCGGACGg -3'
miRNA:   3'- gCGCa-GCUUCUgCUUCUgCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 38218 0.66 0.996318
Target:  5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3'
miRNA:   3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5'
9131 5' -53.1 NC_002512.2 + 71888 0.66 0.996535
Target:  5'- gGCGUCGAAcuccucccggucgccGAUGucGACGcuguCGGGCa -3'
miRNA:   3'- gCGCAGCUU---------------CUGCuuCUGCu---GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 3837 0.66 0.995059
Target:  5'- gGUGcCGAGGcCGAggucgcagucguAGACGgaGCGGACGu -3'
miRNA:   3'- gCGCaGCUUCuGCU------------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 139279 0.66 0.996318
Target:  5'- gCGCG-CGggGGCGAAGGgGGgcgcccgcccCGGGgGa -3'
miRNA:   3'- -GCGCaGCuuCUGCUUCUgCU----------GCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 95443 0.66 0.996318
Target:  5'- uCGuCGUUGAAGGCcAGGGCGAggaacccccUGGGCa -3'
miRNA:   3'- -GC-GCAGCUUCUGcUUCUGCU---------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 223911 0.66 0.996318
Target:  5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3'
miRNA:   3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 90188 0.66 0.995726
Target:  5'- uCGCGa-GAGGAgCGGuaaccAGACGACGGuCGu -3'
miRNA:   3'- -GCGCagCUUCU-GCU-----UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 82423 0.66 0.995059
Target:  5'- cCGCG-CGAAGACcagcaGCGACaGACGg -3'
miRNA:   3'- -GCGCaGCUUCUGcuuc-UGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 133283 0.66 0.995059
Target:  5'- gGCGaUUGAGGGCGAggggaucaucgaAGACGcCGG-CGa -3'
miRNA:   3'- gCGC-AGCUUCUGCU------------UCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 97079 0.66 0.994843
Target:  5'- uGCGgaucuucuuccggaaGGAcGGCGggGGCGACGGcaaGCGg -3'
miRNA:   3'- gCGCag-------------CUU-CUGCuuCUGCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 156518 0.66 0.995726
Target:  5'- gGCGgCGggGcGCGggGGucCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCuuC-UGCuuCU--GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 119986 0.66 0.994309
Target:  5'- gCGCGaCGccGACGAGGGCaa-GGACa -3'
miRNA:   3'- -GCGCaGCuuCUGCUUCUGcugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 86665 0.66 0.993471
Target:  5'- cCGCGUcCGAgcGGACGgcGcGCGAgggGGACGg -3'
miRNA:   3'- -GCGCA-GCU--UCUGCuuC-UGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 118029 0.66 0.995726
Target:  5'- -aCGaCGAGGACGc-GGCGACGG-CGg -3'
miRNA:   3'- gcGCaGCUUCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 119544 0.66 0.994309
Target:  5'- gGCuaggCGggGAgCGggGACcgGGCGGACc -3'
miRNA:   3'- gCGca--GCuuCU-GCuuCUG--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 221589 0.66 0.996318
Target:  5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3'
miRNA:   3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.