miRNA display CGI


Results 81 - 100 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 154564 0.66 0.996262
Target:  5'- uCGCcaUGggGgggcaggauaacgGCGAGGGCGACGG-CGg -3'
miRNA:   3'- -GCGcaGCuuC-------------UGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 113835 0.66 0.993985
Target:  5'- gGCGaUGAAGACGGAGAagugcuugggcaaGACGGcCa -3'
miRNA:   3'- gCGCaGCUUCUGCUUCUg------------CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 74875 0.66 0.994309
Target:  5'- cCGCaccCG-GGACGAcGGGCGACGGAUc -3'
miRNA:   3'- -GCGca-GCuUCUGCU-UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 51110 0.66 0.994309
Target:  5'- gCGCugaaGUCGAAGuacauCGAGaACGACGcGACGu -3'
miRNA:   3'- -GCG----CAGCUUCu----GCUUcUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 103394 0.66 0.994309
Target:  5'- uCGCGcccaacgcCGggGAUccGGGCGACGcGACGa -3'
miRNA:   3'- -GCGCa-------GCuuCUGcuUCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 25569 0.66 0.994309
Target:  5'- gGCgGUUGAGGGCGAcGACcaGCGGAUc -3'
miRNA:   3'- gCG-CAGCUUCUGCUuCUGc-UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 118029 0.66 0.995726
Target:  5'- -aCGaCGAGGACGc-GGCGACGG-CGg -3'
miRNA:   3'- gcGCaGCUUCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 195616 0.66 0.996318
Target:  5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3'
miRNA:   3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 217898 0.66 0.995726
Target:  5'- cCGCGUCGucGAgCGgcGGuacgaGACGGugGc -3'
miRNA:   3'- -GCGCAGCuuCU-GCuuCUg----CUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 82423 0.66 0.995059
Target:  5'- cCGCG-CGAAGACcagcaGCGACaGACGg -3'
miRNA:   3'- -GCGCaGCUUCUGcuuc-UGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 103457 0.66 0.995059
Target:  5'- gCGCGggucCGAGGACGcGGcucgggucucgGCGGCGGccGCGg -3'
miRNA:   3'- -GCGCa---GCUUCUGCuUC-----------UGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 201343 0.66 0.995726
Target:  5'- aGCGUgGccGACaucgGgcGGCGGCGGACc -3'
miRNA:   3'- gCGCAgCuuCUG----CuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 226411 0.67 0.989981
Target:  5'- gGCGgCGAcGAUGGAGAUGGCgagaaaggaugaggGGGCGg -3'
miRNA:   3'- gCGCaGCUuCUGCUUCUGCUG--------------CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74916 0.67 0.989603
Target:  5'- aCGCGgaggccCGGAGGCGGaucgcggaccgcgggAGAgCGACgGGACGa -3'
miRNA:   3'- -GCGCa-----GCUUCUGCU---------------UCU-GCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 154804 0.67 0.990348
Target:  5'- aGCGggagUGAGcGACGGAGgcaGCGGCGG-CGg -3'
miRNA:   3'- gCGCa---GCUU-CUGCUUC---UGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 55539 0.67 0.990348
Target:  5'- cCGCauccCGGcGGACGAGGgcGCGGCGGACc -3'
miRNA:   3'- -GCGca--GCU-UCUGCUUC--UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 75208 0.67 0.990348
Target:  5'- cCGC-UCGGAGcCGGAcggucgcccGACGuCGGACGg -3'
miRNA:   3'- -GCGcAGCUUCuGCUU---------CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74011 0.67 0.990348
Target:  5'- cCGcCGUCGggGACGAAcagcGugGcCGGGu- -3'
miRNA:   3'- -GC-GCAGCuuCUGCUU----CugCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 27773 0.67 0.990348
Target:  5'- gGCGcCaccagcuGACGAGGACGcgguCGGACGa -3'
miRNA:   3'- gCGCaGcuu----CUGCUUCUGCu---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 44421 0.67 0.990105
Target:  5'- gGCGgcaggaccacggCGAAGGagcaGAGGGCGGacaGGACGg -3'
miRNA:   3'- gCGCa-----------GCUUCUg---CUUCUGCUg--CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.