Results 101 - 120 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 153250 | 0.67 | 0.992536 |
Target: 5'- aGCGagccgGGAGACGAu--CGACGGAUGc -3' miRNA: 3'- gCGCag---CUUCUGCUucuGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 13491 | 0.67 | 0.991498 |
Target: 5'- uGCGgcCGAAcaacACGGAGACGGCGGcCa -3' miRNA: 3'- gCGCa-GCUUc---UGCUUCUGCUGCCuGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 30585 | 0.67 | 0.991498 |
Target: 5'- gCGCGUCcuggaGGAGGCcaccaaccgGAGGGCG-CGGAUGu -3' miRNA: 3'- -GCGCAG-----CUUCUG---------CUUCUGCuGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 123123 | 0.67 | 0.991388 |
Target: 5'- cCGcCGUCGGcggccgucccgggGGACGggG-CGGCGGcgccGCGa -3' miRNA: 3'- -GC-GCAGCU-------------UCUGCuuCuGCUGCC----UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 102417 | 0.67 | 0.989081 |
Target: 5'- cCGCGUCcggacggcaGAGuauuagauguGACGGAGAgGACGcGGCGg -3' miRNA: 3'- -GCGCAG---------CUU----------CUGCUUCUgCUGC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 74916 | 0.67 | 0.989603 |
Target: 5'- aCGCGgaggccCGGAGGCGGaucgcggaccgcgggAGAgCGACgGGACGa -3' miRNA: 3'- -GCGCa-----GCUUCUGCU---------------UCU-GCUG-CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 226411 | 0.67 | 0.989981 |
Target: 5'- gGCGgCGAcGAUGGAGAUGGCgagaaaggaugaggGGGCGg -3' miRNA: 3'- gCGCaGCUuCUGCUUCUGCUG--------------CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 44421 | 0.67 | 0.990105 |
Target: 5'- gGCGgcaggaccacggCGAAGGagcaGAGGGCGGacaGGACGg -3' miRNA: 3'- gCGCa-----------GCUUCUg---CUUCUGCUg--CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 14529 | 0.67 | 0.990348 |
Target: 5'- aGCG-CGc-GACGGAGuCGACGGAg- -3' miRNA: 3'- gCGCaGCuuCUGCUUCuGCUGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 154804 | 0.67 | 0.990348 |
Target: 5'- aGCGggagUGAGcGACGGAGgcaGCGGCGG-CGg -3' miRNA: 3'- gCGCa---GCUU-CUGCUUC---UGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 55539 | 0.67 | 0.990348 |
Target: 5'- cCGCauccCGGcGGACGAGGgcGCGGCGGACc -3' miRNA: 3'- -GCGca--GCU-UCUGCUUC--UGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 46720 | 0.67 | 0.987687 |
Target: 5'- gGCGUaCGucauGGCGgcGGCGGCGGGg- -3' miRNA: 3'- gCGCA-GCuu--CUGCuuCUGCUGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 96994 | 0.67 | 0.990348 |
Target: 5'- uCGCGUCGccgGGGACGccGuCGucgauuuccuccGCGGACGg -3' miRNA: 3'- -GCGCAGC---UUCUGCuuCuGC------------UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 138030 | 0.67 | 0.990348 |
Target: 5'- gGCGgccUCGggGGCauGAgccgggacuGGuCGACGGACGg -3' miRNA: 3'- gCGC---AGCuuCUG--CU---------UCuGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 4495 | 0.67 | 0.990348 |
Target: 5'- gGCGcCGucccCGAAGAgGAUGGACGc -3' miRNA: 3'- gCGCaGCuucuGCUUCUgCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 38274 | 0.67 | 0.990348 |
Target: 5'- uCGCGcgaGAAGACGc---CGACGGACu -3' miRNA: 3'- -GCGCag-CUUCUGCuucuGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 48778 | 0.67 | 0.990348 |
Target: 5'- aCGUGUCccAGACGcuGA-GGCGGGCGu -3' miRNA: 3'- -GCGCAGcuUCUGCuuCUgCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 77306 | 0.67 | 0.990348 |
Target: 5'- gCGUGUCGuuucGCG-AGGCGACGGGg- -3' miRNA: 3'- -GCGCAGCuuc-UGCuUCUGCUGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 100060 | 0.67 | 0.990348 |
Target: 5'- aCGCGggggCGgcGGCGccGACGACGagaagaGGCGg -3' miRNA: 3'- -GCGCa---GCuuCUGCuuCUGCUGC------CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 45455 | 0.67 | 0.989081 |
Target: 5'- cCGaCGcCGgcGGCGGccgAGGCGACGGAg- -3' miRNA: 3'- -GC-GCaGCuuCUGCU---UCUGCUGCCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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