miRNA display CGI


Results 121 - 140 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 140580 0.67 0.992536
Target:  5'- --gGUCG-AGACGGAG--GGCGGACGc -3'
miRNA:   3'- gcgCAGCuUCUGCUUCugCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 153250 0.67 0.992536
Target:  5'- aGCGagccgGGAGACGAu--CGACGGAUGc -3'
miRNA:   3'- gCGCag---CUUCUGCUucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 42527 0.67 0.992536
Target:  5'- uCGCGUUGucGGACGuGGGGCG-CGGAg- -3'
miRNA:   3'- -GCGCAGCu-UCUGC-UUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 88417 0.67 0.992536
Target:  5'- uGUGUCGGucgcGACGGcuccgcgauaacGGACGuCGGACc -3'
miRNA:   3'- gCGCAGCUu---CUGCU------------UCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 127695 0.67 0.992536
Target:  5'- cCGCGaUGAAgGACGAGGugGA-GGAUc -3'
miRNA:   3'- -GCGCaGCUU-CUGCUUCugCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 226707 0.67 0.986787
Target:  5'- aCGaCGUCGAcgcgaaacgaguagAGAcagcgaggcuguccCGGAGACGGCGGAgGc -3'
miRNA:   3'- -GC-GCAGCU--------------UCU--------------GCUUCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 53497 0.67 0.986159
Target:  5'- aCGCGgcgCGGAcGAuCGAAGA-GAUGGugGg -3'
miRNA:   3'- -GCGCa--GCUU-CU-GCUUCUgCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 63769 0.67 0.986159
Target:  5'- gGUGUCGAgcuuguaguuggGGGCGGAGGucuUGGCGGAg- -3'
miRNA:   3'- gCGCAGCU------------UCUGCUUCU---GCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 36703 0.67 0.986159
Target:  5'- aCGCgGUCGAAGAaGAAGGCGACc---- -3'
miRNA:   3'- -GCG-CAGCUUCUgCUUCUGCUGccugc -5'
9131 5' -53.1 NC_002512.2 + 183603 0.67 0.991498
Target:  5'- cCGUuuGUCGGAGACuGAuGAUGACaGACa -3'
miRNA:   3'- -GCG--CAGCUUCUG-CUuCUGCUGcCUGc -5'
9131 5' -53.1 NC_002512.2 + 48487 0.67 0.991498
Target:  5'- aCGCGUCcccGGCGGAGGCca-GGGCGc -3'
miRNA:   3'- -GCGCAGcuuCUGCUUCUGcugCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 138030 0.67 0.990348
Target:  5'- gGCGgccUCGggGGCauGAgccgggacuGGuCGACGGACGg -3'
miRNA:   3'- gCGC---AGCuuCUG--CU---------UCuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 38274 0.67 0.990348
Target:  5'- uCGCGcgaGAAGACGc---CGACGGACu -3'
miRNA:   3'- -GCGCag-CUUCUGCuucuGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 48778 0.67 0.990348
Target:  5'- aCGUGUCccAGACGcuGA-GGCGGGCGu -3'
miRNA:   3'- -GCGCAGcuUCUGCuuCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77306 0.67 0.990348
Target:  5'- gCGUGUCGuuucGCG-AGGCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuc-UGCuUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 100060 0.67 0.990348
Target:  5'- aCGCGggggCGgcGGCGccGACGACGagaagaGGCGg -3'
miRNA:   3'- -GCGCa---GCuuCUGCuuCUGCUGC------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 123123 0.67 0.991388
Target:  5'- cCGcCGUCGGcggccgucccgggGGACGggG-CGGCGGcgccGCGa -3'
miRNA:   3'- -GC-GCAGCU-------------UCUGCuuCuGCUGCC----UGC- -5'
9131 5' -53.1 NC_002512.2 + 30585 0.67 0.991498
Target:  5'- gCGCGUCcuggaGGAGGCcaccaaccgGAGGGCG-CGGAUGu -3'
miRNA:   3'- -GCGCAG-----CUUCUG---------CUUCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 13491 0.67 0.991498
Target:  5'- uGCGgcCGAAcaacACGGAGACGGCGGcCa -3'
miRNA:   3'- gCGCa-GCUUc---UGCUUCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 84017 0.67 0.986159
Target:  5'- --gGUCGccGACGAAGuugaaGACGGGCa -3'
miRNA:   3'- gcgCAGCuuCUGCUUCug---CUGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.