miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 75208 0.67 0.990348
Target:  5'- cCGC-UCGGAGcCGGAcggucgcccGACGuCGGACGg -3'
miRNA:   3'- -GCGcAGCUUCuGCUU---------CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74011 0.67 0.990348
Target:  5'- cCGcCGUCGggGACGAAcagcGugGcCGGGu- -3'
miRNA:   3'- -GC-GCAGCuuCUGCUU----CugCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 56334 0.67 0.989081
Target:  5'- aGCG-CGAguAGACGGcacagcccgggcAGAcggcccCGACGGACGg -3'
miRNA:   3'- gCGCaGCU--UCUGCU------------UCU------GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 49399 0.67 0.989081
Target:  5'- aGCGUucgCGAcGGACGAAGGacugGACGcGACGc -3'
miRNA:   3'- gCGCA---GCU-UCUGCUUCUg---CUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 45455 0.67 0.989081
Target:  5'- cCGaCGcCGgcGGCGGccgAGGCGACGGAg- -3'
miRNA:   3'- -GC-GCaGCuuCUGCU---UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 6395 0.67 0.989081
Target:  5'- uCGCGaCGGGcAgGGAGGCGGCGG-CGg -3'
miRNA:   3'- -GCGCaGCUUcUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 157817 0.67 0.989081
Target:  5'- uGCuGUUGAGGAUGggGuuCGAccCGGugGa -3'
miRNA:   3'- gCG-CAGCUUCUGCuuCu-GCU--GCCugC- -5'
9131 5' -53.1 NC_002512.2 + 91011 0.67 0.98826
Target:  5'- gGCGUCGGAGgcccaucagcgggauACGggGACugguGCGGgaGCGg -3'
miRNA:   3'- gCGCAGCUUC---------------UGCuuCUGc---UGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 43091 0.67 0.987687
Target:  5'- gCGCGgCGAGcaGCGggGACGGCucgagGGACa -3'
miRNA:   3'- -GCGCaGCUUc-UGCuuCUGCUG-----CCUGc -5'
9131 5' -53.1 NC_002512.2 + 14945 0.67 0.987687
Target:  5'- uGCGUCcgcggccacggGAGGACGAAccgcGGCcGCGGugGa -3'
miRNA:   3'- gCGCAG-----------CUUCUGCUU----CUGcUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 24262 0.67 0.989081
Target:  5'- cCGCGggcaGGaaGGACGgcGGCGACGGcaucccGCGg -3'
miRNA:   3'- -GCGCag--CU--UCUGCuuCUGCUGCC------UGC- -5'
9131 5' -53.1 NC_002512.2 + 102417 0.67 0.989081
Target:  5'- cCGCGUCcggacggcaGAGuauuagauguGACGGAGAgGACGcGGCGg -3'
miRNA:   3'- -GCGCAG---------CUU----------CUGCUUCUgCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 55539 0.67 0.990348
Target:  5'- cCGCauccCGGcGGACGAGGgcGCGGCGGACc -3'
miRNA:   3'- -GCGca--GCU-UCUGCUUC--UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 27773 0.67 0.990348
Target:  5'- gGCGcCaccagcuGACGAGGACGcgguCGGACGa -3'
miRNA:   3'- gCGCaGcuu----CUGCUUCUGCu---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 154804 0.67 0.990348
Target:  5'- aGCGggagUGAGcGACGGAGgcaGCGGCGG-CGg -3'
miRNA:   3'- gCGCa---GCUU-CUGCUUC---UGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 127695 0.67 0.992536
Target:  5'- cCGCGaUGAAgGACGAGGugGA-GGAUc -3'
miRNA:   3'- -GCGCaGCUU-CUGCUUCugCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 14529 0.67 0.990348
Target:  5'- aGCG-CGc-GACGGAGuCGACGGAg- -3'
miRNA:   3'- gCGCaGCuuCUGCUUCuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 44421 0.67 0.990105
Target:  5'- gGCGgcaggaccacggCGAAGGagcaGAGGGCGGacaGGACGg -3'
miRNA:   3'- gCGCa-----------GCUUCUg---CUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 226411 0.67 0.989981
Target:  5'- gGCGgCGAcGAUGGAGAUGGCgagaaaggaugaggGGGCGg -3'
miRNA:   3'- gCGCaGCUuCUGCUUCUGCUG--------------CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74916 0.67 0.989603
Target:  5'- aCGCGgaggccCGGAGGCGGaucgcggaccgcgggAGAgCGACgGGACGa -3'
miRNA:   3'- -GCGCa-----GCUUCUGCU---------------UCU-GCUG-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.