miRNA display CGI


Results 161 - 180 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 153250 0.67 0.992536
Target:  5'- aGCGagccgGGAGACGAu--CGACGGAUGc -3'
miRNA:   3'- gCGCag---CUUCUGCUucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 42527 0.67 0.992536
Target:  5'- uCGCGUUGucGGACGuGGGGCG-CGGAg- -3'
miRNA:   3'- -GCGCAGCu-UCUGC-UUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 88417 0.67 0.992536
Target:  5'- uGUGUCGGucgcGACGGcuccgcgauaacGGACGuCGGACc -3'
miRNA:   3'- gCGCAGCUu---CUGCU------------UCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 127695 0.67 0.992536
Target:  5'- cCGCGaUGAAgGACGAGGugGA-GGAUc -3'
miRNA:   3'- -GCGCaGCUU-CUGCUUCugCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 56334 0.67 0.989081
Target:  5'- aGCG-CGAguAGACGGcacagcccgggcAGAcggcccCGACGGACGg -3'
miRNA:   3'- gCGCaGCU--UCUGCU------------UCU------GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 180545 0.67 0.992536
Target:  5'- uCGuCGUCGAucGGCGcuuGCGGCGGGCu -3'
miRNA:   3'- -GC-GCAGCUu-CUGCuucUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 30585 0.67 0.991498
Target:  5'- gCGCGUCcuggaGGAGGCcaccaaccgGAGGGCG-CGGAUGu -3'
miRNA:   3'- -GCGCAG-----CUUCUG---------CUUCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 123123 0.67 0.991388
Target:  5'- cCGcCGUCGGcggccgucccgggGGACGggG-CGGCGGcgccGCGa -3'
miRNA:   3'- -GC-GCAGCU-------------UCUGCuuCuGCUGCC----UGC- -5'
9131 5' -53.1 NC_002512.2 + 100060 0.67 0.990348
Target:  5'- aCGCGggggCGgcGGCGccGACGACGagaagaGGCGg -3'
miRNA:   3'- -GCGCa---GCuuCUGCuuCUGCUGC------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 138030 0.67 0.990348
Target:  5'- gGCGgccUCGggGGCauGAgccgggacuGGuCGACGGACGg -3'
miRNA:   3'- gCGC---AGCuuCUG--CU---------UCuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 4495 0.67 0.990348
Target:  5'- gGCGcCGucccCGAAGAgGAUGGACGc -3'
miRNA:   3'- gCGCaGCuucuGCUUCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 44421 0.67 0.990105
Target:  5'- gGCGgcaggaccacggCGAAGGagcaGAGGGCGGacaGGACGg -3'
miRNA:   3'- gCGCa-----------GCUUCUg---CUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 14529 0.67 0.990348
Target:  5'- aGCG-CGc-GACGGAGuCGACGGAg- -3'
miRNA:   3'- gCGCaGCuuCUGCUUCuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 154804 0.67 0.990348
Target:  5'- aGCGggagUGAGcGACGGAGgcaGCGGCGG-CGg -3'
miRNA:   3'- gCGCa---GCUU-CUGCUUC---UGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 27773 0.67 0.990348
Target:  5'- gGCGcCaccagcuGACGAGGACGcgguCGGACGa -3'
miRNA:   3'- gCGCaGcuu----CUGCUUCUGCu---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 55539 0.67 0.990348
Target:  5'- cCGCauccCGGcGGACGAGGgcGCGGCGGACc -3'
miRNA:   3'- -GCGca--GCU-UCUGCUUC--UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 74011 0.67 0.990348
Target:  5'- cCGcCGUCGggGACGAAcagcGugGcCGGGu- -3'
miRNA:   3'- -GC-GCAGCuuCUGCUU----CugCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 38274 0.67 0.990348
Target:  5'- uCGCGcgaGAAGACGc---CGACGGACu -3'
miRNA:   3'- -GCGCag-CUUCUGCuucuGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 48778 0.67 0.990348
Target:  5'- aCGUGUCccAGACGcuGA-GGCGGGCGu -3'
miRNA:   3'- -GCGCAGcuUCUGCuuCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77306 0.67 0.990348
Target:  5'- gCGUGUCGuuucGCG-AGGCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuc-UGCuUCUGCUGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.