Results 61 - 80 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 132709 | 0.76 | 0.729455 |
Target: 5'- aCGUGUCGAccgucAGcACGAAGGCGAgcaGGACGc -3' miRNA: 3'- -GCGCAGCU-----UC-UGCUUCUGCUg--CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 121791 | 0.75 | 0.784933 |
Target: 5'- gGCGgggacgcCGAAGACGAcGACGACGacGACGa -3' miRNA: 3'- gCGCa------GCUUCUGCUuCUGCUGC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 56584 | 0.75 | 0.784933 |
Target: 5'- gGCGUUGGAGcCGAuGACGgcccuccaGCGGACGg -3' miRNA: 3'- gCGCAGCUUCuGCUuCUGC--------UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 191460 | 0.75 | 0.784933 |
Target: 5'- gGCGUUGAGGugGGccgaguacgAGGCGcCGGACa -3' miRNA: 3'- gCGCAGCUUCugCU---------UCUGCuGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 227208 | 0.75 | 0.775961 |
Target: 5'- cCGCG-CGcGGACcaGGAGGCGGCGGACc -3' miRNA: 3'- -GCGCaGCuUCUG--CUUCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 83805 | 0.75 | 0.766868 |
Target: 5'- cCGCGUCGGGcGCGccGGCGGCGG-CGg -3' miRNA: 3'- -GCGCAGCUUcUGCuuCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 77216 | 0.75 | 0.784933 |
Target: 5'- uGCGUCGAGcGACcgGGAGGCGAacgagcgccCGGGCGg -3' miRNA: 3'- gCGCAGCUU-CUG--CUUCUGCU---------GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 57200 | 0.75 | 0.775961 |
Target: 5'- aGCGgucgCGcAGGACGGAGACGagggccgagacGCGGGCGu -3' miRNA: 3'- gCGCa---GC-UUCUGCUUCUGC-----------UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 18675 | 0.75 | 0.775961 |
Target: 5'- -uCGUCGGAGAgGAagagcucguGGGCGGCGGGCa -3' miRNA: 3'- gcGCAGCUUCUgCU---------UCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 62227 | 0.75 | 0.782254 |
Target: 5'- aCGCGUccugCGAgaggaccgacgagaGGACGAgcuGGGCGACGGGCa -3' miRNA: 3'- -GCGCA----GCU--------------UCUGCU---UCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 71550 | 0.75 | 0.766868 |
Target: 5'- gGUGUCGAAGACGGuccGGAgcGCGGACu -3' miRNA: 3'- gCGCAGCUUCUGCU---UCUgcUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 92600 | 0.75 | 0.757663 |
Target: 5'- gGCGguccCGAGGcCGGucgcGACGACGGACGg -3' miRNA: 3'- gCGCa---GCUUCuGCUu---CUGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 122766 | 0.75 | 0.748353 |
Target: 5'- gGcCGgaggaCGAGGACGAGGACGAggaGGACGg -3' miRNA: 3'- gC-GCa----GCUUCUGCUUCUGCUg--CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 46787 | 0.75 | 0.766868 |
Target: 5'- aCGC-UCGAAGACcuccgucuGAAGACGAcguCGGACGa -3' miRNA: 3'- -GCGcAGCUUCUG--------CUUCUGCU---GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 150085 | 0.75 | 0.766868 |
Target: 5'- cCGcCGUCGGGcGAUGGAGACGgACGaGACGg -3' miRNA: 3'- -GC-GCAGCUU-CUGCUUCUGC-UGC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 196407 | 0.75 | 0.757663 |
Target: 5'- gGCG-CGggGACGcggGGGGCGGCGGcCGg -3' miRNA: 3'- gCGCaGCuuCUGC---UUCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 123559 | 0.75 | 0.748353 |
Target: 5'- gGaCGUCGAGGGgGAGaGCGACGGGCu -3' miRNA: 3'- gC-GCAGCUUCUgCUUcUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 107956 | 0.75 | 0.758588 |
Target: 5'- uCGUGUCGAuggcguccagggccaGGGCGAAGGCGcagaaggucgggcuGCGGAUGg -3' miRNA: 3'- -GCGCAGCU---------------UCUGCUUCUGC--------------UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 200268 | 0.75 | 0.775961 |
Target: 5'- aCGaCGaCGggGACGAGGACGACGaGCc -3' miRNA: 3'- -GC-GCaGCuuCUGCUUCUGCUGCcUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 95297 | 0.74 | 0.802483 |
Target: 5'- -cCGUCGGcGGACGAGGcgccgaagcaGCGGCGGGCGa -3' miRNA: 3'- gcGCAGCU-UCUGCUUC----------UGCUGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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