miRNA display CGI


Results 121 - 140 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 205451 0.73 0.851422
Target:  5'- uGCGuUCGGAcGACGAGGACGAguacuacugGGACGa -3'
miRNA:   3'- gCGC-AGCUU-CUGCUUCUGCUg--------CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 190887 0.73 0.851422
Target:  5'- cCGCGUCGcGGGGCG-AGGCGAacCGGAgGa -3'
miRNA:   3'- -GCGCAGC-UUCUGCuUCUGCU--GCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 21235 0.73 0.851422
Target:  5'- cCGgGgCGGAGACGggGGCGGagaGGGCu -3'
miRNA:   3'- -GCgCaGCUUCUGCuuCUGCUg--CCUGc -5'
9131 5' -53.1 NC_002512.2 + 34910 0.73 0.851422
Target:  5'- uGCGcCGAgaggaGGACG-AGACGACGG-CGg -3'
miRNA:   3'- gCGCaGCU-----UCUGCuUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 216801 0.73 0.851422
Target:  5'- gGCGUCGuuGACGAuGGCGucGCGGGuCGg -3'
miRNA:   3'- gCGCAGCuuCUGCUuCUGC--UGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 102460 0.73 0.843694
Target:  5'- gGCGUCGcGGAgGAGGGCGcgcccgucGCGGugGc -3'
miRNA:   3'- gCGCAGCuUCUgCUUCUGC--------UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 99245 0.73 0.843694
Target:  5'- gCGCagaaGUCGAGGGacgcccCGAGGACGcCGGACGc -3'
miRNA:   3'- -GCG----CAGCUUCU------GCUUCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 31682 0.73 0.873464
Target:  5'- gGCGgaCGggGAgGAGGACG-CGGACc -3'
miRNA:   3'- gCGCa-GCuuCUgCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 57044 0.73 0.866312
Target:  5'- cCGCGUcCGAcGACcgGggGGCGcCGGGCGa -3'
miRNA:   3'- -GCGCA-GCUuCUG--CuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 201724 0.73 0.873464
Target:  5'- uCGuCGUCGcGGGgGGAGACGACGGcUGg -3'
miRNA:   3'- -GC-GCAGCuUCUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 125143 0.73 0.873464
Target:  5'- gGCGaCGAGGACGgcGACG-CGGAg- -3'
miRNA:   3'- gCGCaGCUUCUGCuuCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 52637 0.73 0.866312
Target:  5'- uGCGggaGGAGcUGGAGGCGACGGAgCGg -3'
miRNA:   3'- gCGCag-CUUCuGCUUCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 92004 0.73 0.858963
Target:  5'- cCGCGUCGccGGCGGcGGACucGCGGGCGu -3'
miRNA:   3'- -GCGCAGCuuCUGCU-UCUGc-UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 113904 0.73 0.873464
Target:  5'- gGCG-CaGAAGACGucGACGagGCGGACGu -3'
miRNA:   3'- gCGCaG-CUUCUGCuuCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 75760 0.73 0.850657
Target:  5'- gCGCGUCGGAGACcgcggagcccggGAGGACGgggcagaGCGGGgGa -3'
miRNA:   3'- -GCGCAGCUUCUG------------CUUCUGC-------UGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 153154 0.73 0.866312
Target:  5'- uCGCGgucCGGaaAGGCGAccuacgGGGCGGCGGGCa -3'
miRNA:   3'- -GCGCa--GCU--UCUGCU------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 97842 0.73 0.866312
Target:  5'- gCGCGggggaagCGGAGGCGAcGACcgaGACGGACc -3'
miRNA:   3'- -GCGCa------GCUUCUGCUuCUG---CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 213642 0.73 0.858963
Target:  5'- cCGCGggCGAcGGCGAcGACGACGauGACGg -3'
miRNA:   3'- -GCGCa-GCUuCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 227509 0.73 0.858963
Target:  5'- cCGCGaccCGggGGgGAGaguccGGCGGCGGACGg -3'
miRNA:   3'- -GCGCa--GCuuCUgCUU-----CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 24765 0.73 0.85747
Target:  5'- -cCGUCGGAGACGAAGACccgcucgggucCGGGCGc -3'
miRNA:   3'- gcGCAGCUUCUGCUUCUGcu---------GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.