miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 228418 0.73 0.850657
Target:  5'- gGCGcUgGggGGCGggGGCGggaacggggaggaGCGGACGc -3'
miRNA:   3'- gCGC-AgCuuCUGCuuCUGC-------------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 229508 0.73 0.858963
Target:  5'- gGCGggu-GGGCGGAGGCGGCGGAg- -3'
miRNA:   3'- gCGCagcuUCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 104 0.73 0.858963
Target:  5'- gGCGggu-GGGCGGAGGCGGCGGAg- -3'
miRNA:   3'- gCGCagcuUCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 220676 0.73 0.851422
Target:  5'- cCGCGUCGugcugggcgacGGGACGGAGgucagucccuGCGACGaGACGu -3'
miRNA:   3'- -GCGCAGC-----------UUCUGCUUC----------UGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 190887 0.73 0.851422
Target:  5'- cCGCGUCGcGGGGCG-AGGCGAacCGGAgGa -3'
miRNA:   3'- -GCGCAGC-UUCUGCuUCUGCU--GCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 122969 0.72 0.899999
Target:  5'- uCGCucgaCGAGGACGAGGAagaGGCGGAUc -3'
miRNA:   3'- -GCGca--GCUUCUGCUUCUg--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 149845 0.72 0.899999
Target:  5'- gCGCGaCGAGGACGAcGACGAaagcaGcGACGc -3'
miRNA:   3'- -GCGCaGCUUCUGCUuCUGCUg----C-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 44532 0.72 0.880412
Target:  5'- uCGCaGUCGAcGGCGAuGGCGGCGGcCa -3'
miRNA:   3'- -GCG-CAGCUuCUGCUuCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 133225 0.72 0.899999
Target:  5'- cCGCccagCGAGGACGGgaGGGCGGCGG-CGc -3'
miRNA:   3'- -GCGca--GCUUCUGCU--UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 141011 0.72 0.899999
Target:  5'- gCGCGggGAGGACGggGACcACGGuCu -3'
miRNA:   3'- -GCGCagCUUCUGCuuCUGcUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 51732 0.72 0.906096
Target:  5'- -aCGUCGAacGGGCGGAGAgGcugcuGCGGACGc -3'
miRNA:   3'- gcGCAGCU--UCUGCUUCUgC-----UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 191277 0.72 0.899999
Target:  5'- gGCGgCGAcGGgGAGGGCGGCgGGGCGg -3'
miRNA:   3'- gCGCaGCUuCUgCUUCUGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 189900 0.72 0.906096
Target:  5'- gGCGaggaCGgcGGCGAGGACGGCGGcucCGg -3'
miRNA:   3'- gCGCa---GCuuCUGCUUCUGCUGCCu--GC- -5'
9131 5' -53.1 NC_002512.2 + 22394 0.72 0.906096
Target:  5'- uCGCGgaucCGGAGACGGgcgccgAGACGAgcgacuCGGACGc -3'
miRNA:   3'- -GCGCa---GCUUCUGCU------UCUGCU------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 200795 0.72 0.893684
Target:  5'- cCGcCGcCGAAGACGAGGcGgGACGcGACGg -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUC-UgCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 5000 0.72 0.906096
Target:  5'- aCGgGUCGAAGGCGGc--CGGCGaGGCGg -3'
miRNA:   3'- -GCgCAGCUUCUGCUucuGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 194264 0.72 0.887154
Target:  5'- uCGCGgccgccgaGGAGugGAAGAUGGCGGccaGCGu -3'
miRNA:   3'- -GCGCag------CUUCugCUUCUGCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 121826 0.72 0.887154
Target:  5'- uCGcCGUCGGccGGACGggGGgGA-GGACGg -3'
miRNA:   3'- -GC-GCAGCU--UCUGCuuCUgCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 227625 0.72 0.887154
Target:  5'- gGCGgCGgcGGCGAggucAGGCGACGGAgCGc -3'
miRNA:   3'- gCGCaGCuuCUGCU----UCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 75029 0.72 0.887154
Target:  5'- aGgGcCGggGACGAGGggacgcACGACGGAgGg -3'
miRNA:   3'- gCgCaGCuuCUGCUUC------UGCUGCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.