miRNA display CGI


Results 61 - 80 of 571 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 152796 0.76 0.738948
Target:  5'- cCGUcUCGGAGguccGCGgcGACGGCGGGCGg -3'
miRNA:   3'- -GCGcAGCUUC----UGCuuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 122766 0.75 0.748353
Target:  5'- gGcCGgaggaCGAGGACGAGGACGAggaGGACGg -3'
miRNA:   3'- gC-GCa----GCUUCUGCUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 123559 0.75 0.748353
Target:  5'- gGaCGUCGAGGGgGAGaGCGACGGGCu -3'
miRNA:   3'- gC-GCAGCUUCUgCUUcUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 196407 0.75 0.757663
Target:  5'- gGCG-CGggGACGcggGGGGCGGCGGcCGg -3'
miRNA:   3'- gCGCaGCuuCUGC---UUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 92600 0.75 0.757663
Target:  5'- gGCGguccCGAGGcCGGucgcGACGACGGACGg -3'
miRNA:   3'- gCGCa---GCUUCuGCUu---CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 107956 0.75 0.758588
Target:  5'- uCGUGUCGAuggcguccagggccaGGGCGAAGGCGcagaaggucgggcuGCGGAUGg -3'
miRNA:   3'- -GCGCAGCU---------------UCUGCUUCUGC--------------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 150085 0.75 0.766868
Target:  5'- cCGcCGUCGGGcGAUGGAGACGgACGaGACGg -3'
miRNA:   3'- -GC-GCAGCUU-CUGCUUCUGC-UGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 71550 0.75 0.766868
Target:  5'- gGUGUCGAAGACGGuccGGAgcGCGGACu -3'
miRNA:   3'- gCGCAGCUUCUGCU---UCUgcUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 83805 0.75 0.766868
Target:  5'- cCGCGUCGGGcGCGccGGCGGCGG-CGg -3'
miRNA:   3'- -GCGCAGCUUcUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 46787 0.75 0.766868
Target:  5'- aCGC-UCGAAGACcuccgucuGAAGACGAcguCGGACGa -3'
miRNA:   3'- -GCGcAGCUUCUG--------CUUCUGCU---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 18675 0.75 0.775961
Target:  5'- -uCGUCGGAGAgGAagagcucguGGGCGGCGGGCa -3'
miRNA:   3'- gcGCAGCUUCUgCU---------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 200268 0.75 0.775961
Target:  5'- aCGaCGaCGggGACGAGGACGACGaGCc -3'
miRNA:   3'- -GC-GCaGCuuCUGCUUCUGCUGCcUGc -5'
9131 5' -53.1 NC_002512.2 + 227208 0.75 0.775961
Target:  5'- cCGCG-CGcGGACcaGGAGGCGGCGGACc -3'
miRNA:   3'- -GCGCaGCuUCUG--CUUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 57200 0.75 0.775961
Target:  5'- aGCGgucgCGcAGGACGGAGACGagggccgagacGCGGGCGu -3'
miRNA:   3'- gCGCa---GC-UUCUGCUUCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 62227 0.75 0.782254
Target:  5'- aCGCGUccugCGAgaggaccgacgagaGGACGAgcuGGGCGACGGGCa -3'
miRNA:   3'- -GCGCA----GCU--------------UCUGCU---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 56584 0.75 0.784933
Target:  5'- gGCGUUGGAGcCGAuGACGgcccuccaGCGGACGg -3'
miRNA:   3'- gCGCAGCUUCuGCUuCUGC--------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 191460 0.75 0.784933
Target:  5'- gGCGUUGAGGugGGccgaguacgAGGCGcCGGACa -3'
miRNA:   3'- gCGCAGCUUCugCU---------UCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 77216 0.75 0.784933
Target:  5'- uGCGUCGAGcGACcgGGAGGCGAacgagcgccCGGGCGg -3'
miRNA:   3'- gCGCAGCUU-CUG--CUUCUGCU---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 121791 0.75 0.784933
Target:  5'- gGCGgggacgcCGAAGACGAcGACGACGacGACGa -3'
miRNA:   3'- gCGCa------GCUUCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 109026 0.74 0.793776
Target:  5'- gGCGggCGggGACGAGGAccgggggggcuCGGgGGACGa -3'
miRNA:   3'- gCGCa-GCuuCUGCUUCU-----------GCUgCCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.