miRNA display CGI


Results 101 - 120 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 27522 0.74 0.835785
Target:  5'- aGCGUCGGAGGCGGcucAGAccaauCGAgcCGGGCGc -3'
miRNA:   3'- gCGCAGCUUCUGCU---UCU-----GCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228720 0.74 0.835785
Target:  5'- uGCGaaGAAGaacuGCGGAGACGgacGCGGACGg -3'
miRNA:   3'- gCGCagCUUC----UGCUUCUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 125141 0.74 0.835785
Target:  5'- aCGCGUgaaccgCGggGGCcccGggGGCgGGCGGACGg -3'
miRNA:   3'- -GCGCA------GCuuCUG---CuuCUG-CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 122005 0.74 0.835785
Target:  5'- gGCGccCGGAGGggcCGGAGGCGGCGGAuCGg -3'
miRNA:   3'- gCGCa-GCUUCU---GCUUCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 43482 0.74 0.835785
Target:  5'- gGCGUgGAAGcCGAGGACG-CGGAg- -3'
miRNA:   3'- gCGCAgCUUCuGCUUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 92562 0.74 0.835785
Target:  5'- aCGaCGUCGGAGGCGccGACGccGCGGcCGg -3'
miRNA:   3'- -GC-GCAGCUUCUGCuuCUGC--UGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 212536 0.74 0.835785
Target:  5'- uCGgGaUCGucGACGggGACGACGauGACGa -3'
miRNA:   3'- -GCgC-AGCuuCUGCuuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 53380 0.74 0.835785
Target:  5'- aCGCucCGGAGAcCGAGGACGAgGGACc -3'
miRNA:   3'- -GCGcaGCUUCU-GCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 3472 0.74 0.835785
Target:  5'- cCGCGUcCGGAGACGcGGacGCGACGGGu- -3'
miRNA:   3'- -GCGCA-GCUUCUGCuUC--UGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 111211 0.73 0.843694
Target:  5'- cCGaCGUCG-GGACaGAcGAUGACGGGCGg -3'
miRNA:   3'- -GC-GCAGCuUCUG-CUuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 184735 0.73 0.843694
Target:  5'- gCGCGcaUCGAcGACguGAGGAuCGGCGGGCGg -3'
miRNA:   3'- -GCGC--AGCUuCUG--CUUCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 131714 0.73 0.843694
Target:  5'- uGC-UCGGAGACGAuGACGggcGCGGACc -3'
miRNA:   3'- gCGcAGCUUCUGCUuCUGC---UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 57925 0.73 0.843694
Target:  5'- aGCG-CGAGGACGGcgagcgggAGAUaGACGGGCGc -3'
miRNA:   3'- gCGCaGCUUCUGCU--------UCUG-CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 99245 0.73 0.843694
Target:  5'- gCGCagaaGUCGAGGGacgcccCGAGGACGcCGGACGc -3'
miRNA:   3'- -GCG----CAGCUUCU------GCUUCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 124306 0.73 0.843694
Target:  5'- cCGCG-CGGAGcugauCGggGccGCGGCGGACGu -3'
miRNA:   3'- -GCGCaGCUUCu----GCuuC--UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 102460 0.73 0.843694
Target:  5'- gGCGUCGcGGAgGAGGGCGcgcccgucGCGGugGc -3'
miRNA:   3'- gCGCAGCuUCUgCUUCUGC--------UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 218778 0.73 0.843694
Target:  5'- -cCGUcCGggGACGAGGccgaGGCGGACGa -3'
miRNA:   3'- gcGCA-GCuuCUGCUUCug--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 75760 0.73 0.850657
Target:  5'- gCGCGUCGGAGACcgcggagcccggGAGGACGgggcagaGCGGGgGa -3'
miRNA:   3'- -GCGCAGCUUCUG------------CUUCUGC-------UGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 228418 0.73 0.850657
Target:  5'- gGCGcUgGggGGCGggGGCGggaacggggaggaGCGGACGc -3'
miRNA:   3'- gCGC-AgCuuCUGCuuCUGC-------------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 34910 0.73 0.851422
Target:  5'- uGCGcCGAgaggaGGACG-AGACGACGG-CGg -3'
miRNA:   3'- gCGCaGCU-----UCUGCuUCUGCUGCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.