miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 228213 0.73 0.866312
Target:  5'- cCGCgGUCGAggccGGGCG-AGACGGCGGGa- -3'
miRNA:   3'- -GCG-CAGCU----UCUGCuUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 31682 0.73 0.873464
Target:  5'- gGCGgaCGggGAgGAGGACG-CGGACc -3'
miRNA:   3'- gCGCa-GCuuCUgCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 113904 0.73 0.873464
Target:  5'- gGCG-CaGAAGACGucGACGagGCGGACGu -3'
miRNA:   3'- gCGCaG-CUUCUGCuuCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 125143 0.73 0.873464
Target:  5'- gGCGaCGAGGACGgcGACG-CGGAg- -3'
miRNA:   3'- gCGCaGCUUCUGCuuCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 201724 0.73 0.873464
Target:  5'- uCGuCGUCGcGGGgGGAGACGACGGcUGg -3'
miRNA:   3'- -GC-GCAGCuUCUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 44532 0.72 0.880412
Target:  5'- uCGCaGUCGAcGGCGAuGGCGGCGGcCa -3'
miRNA:   3'- -GCG-CAGCUuCUGCUuCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 227625 0.72 0.887154
Target:  5'- gGCGgCGgcGGCGAggucAGGCGACGGAgCGc -3'
miRNA:   3'- gCGCaGCuuCUGCU----UCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 112807 0.72 0.887154
Target:  5'- gGUGUUGAAGGCGuuGACGGCcacccgguugagGGACa -3'
miRNA:   3'- gCGCAGCUUCUGCuuCUGCUG------------CCUGc -5'
9131 5' -53.1 NC_002512.2 + 75029 0.72 0.887154
Target:  5'- aGgGcCGggGACGAGGggacgcACGACGGAgGg -3'
miRNA:   3'- gCgCaGCuuCUGCUUC------UGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 121826 0.72 0.887154
Target:  5'- uCGcCGUCGGccGGACGggGGgGA-GGACGg -3'
miRNA:   3'- -GC-GCAGCU--UCUGCuuCUgCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 194264 0.72 0.887154
Target:  5'- uCGCGgccgccgaGGAGugGAAGAUGGCGGccaGCGu -3'
miRNA:   3'- -GCGCag------CUUCugCUUCUGCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 11071 0.72 0.887154
Target:  5'- cCGCG--GAGGGCG-AGACGgaGCGGACGg -3'
miRNA:   3'- -GCGCagCUUCUGCuUCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57885 0.72 0.893684
Target:  5'- gGCGaCGgcGGCGAcGGCGACGG-CGa -3'
miRNA:   3'- gCGCaGCuuCUGCUuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 154681 0.72 0.893684
Target:  5'- aCGCGgCGGAGAUGAuGAUGugacuguuGCGGACGu -3'
miRNA:   3'- -GCGCaGCUUCUGCUuCUGC--------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 157034 0.72 0.893684
Target:  5'- aCGCGgccCGGAG-CGAGGACcccggcaaGGCGGGCGu -3'
miRNA:   3'- -GCGCa--GCUUCuGCUUCUG--------CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 200795 0.72 0.893684
Target:  5'- cCGcCGcCGAAGACGAGGcGgGACGcGACGg -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUC-UgCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 122969 0.72 0.899999
Target:  5'- uCGCucgaCGAGGACGAGGAagaGGCGGAUc -3'
miRNA:   3'- -GCGca--GCUUCUGCUUCUg--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 133225 0.72 0.899999
Target:  5'- cCGCccagCGAGGACGGgaGGGCGGCGG-CGc -3'
miRNA:   3'- -GCGca--GCUUCUGCU--UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 141011 0.72 0.899999
Target:  5'- gCGCGggGAGGACGggGACcACGGuCu -3'
miRNA:   3'- -GCGCagCUUCUGCuuCUGcUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 33261 0.72 0.899999
Target:  5'- gGCGUCGGccacccGGGCGAaccgggAGAUGguGCGGACGu -3'
miRNA:   3'- gCGCAGCU------UCUGCU------UCUGC--UGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.