miRNA display CGI


Results 161 - 180 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 149845 0.72 0.899999
Target:  5'- gCGCGaCGAGGACGAcGACGAaagcaGcGACGc -3'
miRNA:   3'- -GCGCaGCUUCUGCUuCUGCUg----C-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 33261 0.72 0.899999
Target:  5'- gGCGUCGGccacccGGGCGAaccgggAGAUGguGCGGACGu -3'
miRNA:   3'- gCGCAGCU------UCUGCU------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 5000 0.72 0.906096
Target:  5'- aCGgGUCGAAGGCGGc--CGGCGaGGCGg -3'
miRNA:   3'- -GCgCAGCUUCUGCUucuGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 28059 0.72 0.906096
Target:  5'- cCGCGgaaGGAGcccccgggcgcgGCGGAGACGGCGGAg- -3'
miRNA:   3'- -GCGCag-CUUC------------UGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 103674 0.72 0.906096
Target:  5'- aGCGccUCGAcGucgcaGAGGGCGGCGGACGc -3'
miRNA:   3'- gCGC--AGCUuCug---CUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 88989 0.72 0.906096
Target:  5'- cCGuCGUCGAcccggAGcGCGggGACGuCGGGCa -3'
miRNA:   3'- -GC-GCAGCU-----UC-UGCuuCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 4744 0.72 0.906096
Target:  5'- uGCGUCGucGACGGcGGAagaGGCGGaACGg -3'
miRNA:   3'- gCGCAGCuuCUGCU-UCUg--CUGCC-UGC- -5'
9131 5' -53.1 NC_002512.2 + 22394 0.72 0.906096
Target:  5'- uCGCGgaucCGGAGACGGgcgccgAGACGAgcgacuCGGACGc -3'
miRNA:   3'- -GCGCa---GCUUCUGCU------UCUGCU------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 189900 0.72 0.906096
Target:  5'- gGCGaggaCGgcGGCGAGGACGGCGGcucCGg -3'
miRNA:   3'- gCGCa---GCuuCUGCUUCUGCUGCCu--GC- -5'
9131 5' -53.1 NC_002512.2 + 51732 0.72 0.906096
Target:  5'- -aCGUCGAacGGGCGGAGAgGcugcuGCGGACGc -3'
miRNA:   3'- gcGCAGCU--UCUGCUUCUgC-----UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 148500 0.72 0.906096
Target:  5'- gGC--CGggGACGggGACGAgGaGGCGg -3'
miRNA:   3'- gCGcaGCuuCUGCuuCUGCUgC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 92030 0.72 0.906096
Target:  5'- gGCGUgGGAGGgGAAGACG-CGGGa- -3'
miRNA:   3'- gCGCAgCUUCUgCUUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 109940 0.71 0.911973
Target:  5'- aGC-UCGGAGACGgcGAUcGCGGACu -3'
miRNA:   3'- gCGcAGCUUCUGCuuCUGcUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 131035 0.71 0.911973
Target:  5'- gGCGUCGggGccGCGggGGagGACGG-CGc -3'
miRNA:   3'- gCGCAGCuuC--UGCuuCUg-CUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 112959 0.71 0.911973
Target:  5'- cCGgGUCGAAGuCGAAGcCGG-GGACGc -3'
miRNA:   3'- -GCgCAGCUUCuGCUUCuGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 42032 0.71 0.911973
Target:  5'- aGCuGUUGAAGACGAucuugccGACGAacuggcucCGGACGg -3'
miRNA:   3'- gCG-CAGCUUCUGCUu------CUGCU--------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 204988 0.71 0.911973
Target:  5'- gGCGaCGggGACcgGAAGGCGG-GGGCGa -3'
miRNA:   3'- gCGCaGCuuCUG--CUUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77500 0.71 0.911973
Target:  5'- cCGCGUCGAAcaaugcGACGggG-CGACcGGuCGa -3'
miRNA:   3'- -GCGCAGCUU------CUGCuuCuGCUG-CCuGC- -5'
9131 5' -53.1 NC_002512.2 + 87662 0.71 0.911973
Target:  5'- cCGCGUuccgCGAAGGCGAcgacgucgAGAcCGACgGGACGc -3'
miRNA:   3'- -GCGCA----GCUUCUGCU--------UCU-GCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 121909 0.71 0.911973
Target:  5'- gCGCGgggagCGAgcgGGACGAGG-CGGCGG-CGg -3'
miRNA:   3'- -GCGCa----GCU---UCUGCUUCuGCUGCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.