miRNA display CGI


Results 181 - 200 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 133416 0.67 0.985999
Target:  5'- gGCGcccCGcGGACGAaaaacccGGACG-CGGACGg -3'
miRNA:   3'- gCGCa--GCuUCUGCU-------UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 201753 0.67 0.985999
Target:  5'- gGCGcCGAucccgggGGACGGgagGGACGagggugagagcGCGGACGg -3'
miRNA:   3'- gCGCaGCU-------UCUGCU---UCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 49721 0.68 0.985176
Target:  5'- aCGCGUCGuaccugcucGGGACGGAGGCcguccuggaccgcccGACgcuGGACGc -3'
miRNA:   3'- -GCGCAGC---------UUCUGCUUCUG---------------CUG---CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 14313 0.68 0.984491
Target:  5'- aCGgGUUGuAGGCGuAGACGACgccgaGGGCGc -3'
miRNA:   3'- -GCgCAGCuUCUGCuUCUGCUG-----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 170784 0.68 0.984491
Target:  5'- gCGCGaUCGgcG-CGAcGACGGCGG-CGa -3'
miRNA:   3'- -GCGC-AGCuuCuGCUuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 150243 0.68 0.984491
Target:  5'- uCGCGuucUCGGAcGACGAGGGgGAC-GACGc -3'
miRNA:   3'- -GCGC---AGCUU-CUGCUUCUgCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 145531 0.68 0.984491
Target:  5'- gCGCGUCGGgccGGAgcaucccgcuCGAGGACG-CGG-CGa -3'
miRNA:   3'- -GCGCAGCU---UCU----------GCUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 95682 0.68 0.984491
Target:  5'- gCGCGUccgcCGGGccuccGGCGggGACGGgGGGCc -3'
miRNA:   3'- -GCGCA----GCUU-----CUGCuuCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 216030 0.68 0.984491
Target:  5'- aGCG-CGGuauaGGGCGcgcGAGuGCGACGGGCGu -3'
miRNA:   3'- gCGCaGCU----UCUGC---UUC-UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 188683 0.68 0.984491
Target:  5'- gGCGgucUCGggGACGAucACGGCGG-Cu -3'
miRNA:   3'- gCGC---AGCuuCUGCUucUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 122305 0.68 0.984491
Target:  5'- uCGUGaccaaGAAGGCGAacguggcccugAGGCGGgGGACGg -3'
miRNA:   3'- -GCGCag---CUUCUGCU-----------UCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 32727 0.68 0.984491
Target:  5'- gGCG-CG-GGugGAAGACGGcCGuGGCGa -3'
miRNA:   3'- gCGCaGCuUCugCUUCUGCU-GC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 187237 0.68 0.984491
Target:  5'- uCGCGUCGcuucGuCGAAcccuccgcguuGAUGGCGGACGu -3'
miRNA:   3'- -GCGCAGCuu--CuGCUU-----------CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 48116 0.68 0.984491
Target:  5'- gGCGcUgGAGGACGuguGGACGaACGcGGCGu -3'
miRNA:   3'- gCGC-AgCUUCUGCu--UCUGC-UGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 152521 0.68 0.984491
Target:  5'- gGgGUCGggGucuCGgcGACGGCGuuccGACGa -3'
miRNA:   3'- gCgCAGCuuCu--GCuuCUGCUGC----CUGC- -5'
9131 5' -53.1 NC_002512.2 + 15401 0.68 0.984491
Target:  5'- cCGCa--GGAGGCgGAAGACGccGCGGugGa -3'
miRNA:   3'- -GCGcagCUUCUG-CUUCUGC--UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 93166 0.68 0.984491
Target:  5'- gCGgGUC-AGGAucacCGAcaGGAUGGCGGACGa -3'
miRNA:   3'- -GCgCAGcUUCU----GCU--UCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 119091 0.68 0.983962
Target:  5'- uCGCG-CGAGGAgGugcGGGCGgccucggcgcagcuGCGGACGg -3'
miRNA:   3'- -GCGCaGCUUCUgCu--UCUGC--------------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 124616 0.68 0.983419
Target:  5'- gGCGUCGgcGGCGucGGCGccuggauccgggugcGCGGcGCGg -3'
miRNA:   3'- gCGCAGCuuCUGCuuCUGC---------------UGCC-UGC- -5'
9131 5' -53.1 NC_002512.2 + 130142 0.68 0.982673
Target:  5'- gGUGUCGcGGccGCGggGcccgGCGGCGGGCc -3'
miRNA:   3'- gCGCAGCuUC--UGCuuC----UGCUGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.