miRNA display CGI


Results 81 - 100 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 15585 0.66 0.993471
Target:  5'- uGCGgcacgcCGAAGACGAAGGUGAagcccuCGGGCc -3'
miRNA:   3'- gCGCa-----GCUUCUGCUUCUGCU------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 140086 0.66 0.993471
Target:  5'- cCGUGaCGAAGaACG-AGACGAC-GACGc -3'
miRNA:   3'- -GCGCaGCUUC-UGCuUCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 86665 0.66 0.993471
Target:  5'- cCGCGUcCGAgcGGACGgcGcGCGAgggGGACGg -3'
miRNA:   3'- -GCGCA-GCU--UCUGCuuC-UGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 153110 0.66 0.993471
Target:  5'- ---aUCcGGGACGAuucgguGGCGACGGGCGg -3'
miRNA:   3'- gcgcAGcUUCUGCUu-----CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 41640 0.66 0.993471
Target:  5'- aGCGaguuaUGGAGAcCGGAGACGcACGGuCGa -3'
miRNA:   3'- gCGCa----GCUUCU-GCUUCUGC-UGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 228648 0.66 0.993471
Target:  5'- gGCGagGAcaagaaagagAGGCGggGAgGACGGGg- -3'
miRNA:   3'- gCGCagCU----------UCUGCuuCUgCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 151851 0.66 0.993471
Target:  5'- gCGUGUCGGAcacGCGAccGGAUGACucguGGGCGc -3'
miRNA:   3'- -GCGCAGCUUc--UGCU--UCUGCUG----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 130661 0.66 0.993471
Target:  5'- uGCG-CGggGcucucCGAGGACcggGACGGGCu -3'
miRNA:   3'- gCGCaGCuuCu----GCUUCUG---CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 113053 0.66 0.993471
Target:  5'- cCGaUGUCGGAGccgcACGAGGGCcaGGCGGuCGa -3'
miRNA:   3'- -GC-GCAGCUUC----UGCUUCUG--CUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 113263 0.66 0.993471
Target:  5'- aGCGagGggGGCGGccggcggggcAGccGCGGCGGGCc -3'
miRNA:   3'- gCGCagCuuCUGCU----------UC--UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 124261 0.66 0.993471
Target:  5'- gGUcUCGGAGACc--GACGACGGcCGg -3'
miRNA:   3'- gCGcAGCUUCUGcuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 54752 0.66 0.993471
Target:  5'- uGCGUgGAcaccaAGACGuggcGGGCGGUGGACa -3'
miRNA:   3'- gCGCAgCU-----UCUGCu---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 88417 0.67 0.992536
Target:  5'- uGUGUCGGucgcGACGGcuccgcgauaacGGACGuCGGACc -3'
miRNA:   3'- gCGCAGCUu---CUGCU------------UCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 140580 0.67 0.992536
Target:  5'- --gGUCG-AGACGGAG--GGCGGACGc -3'
miRNA:   3'- gcgCAGCuUCUGCUUCugCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 153250 0.67 0.992536
Target:  5'- aGCGagccgGGAGACGAu--CGACGGAUGc -3'
miRNA:   3'- gCGCag---CUUCUGCUucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 212870 0.67 0.992536
Target:  5'- aGCGUccccuccucCGGAGACGgcGGCcAUGGACc -3'
miRNA:   3'- gCGCA---------GCUUCUGCuuCUGcUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 127695 0.67 0.992536
Target:  5'- cCGCGaUGAAgGACGAGGugGA-GGAUc -3'
miRNA:   3'- -GCGCaGCUU-CUGCUUCugCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 42527 0.67 0.992536
Target:  5'- uCGCGUUGucGGACGuGGGGCG-CGGAg- -3'
miRNA:   3'- -GCGCAGCu-UCUGC-UUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 123336 0.67 0.992536
Target:  5'- uGCGggaGAAGaACGAGGACGACuacGCGu -3'
miRNA:   3'- gCGCag-CUUC-UGCUUCUGCUGcc-UGC- -5'
9131 5' -53.1 NC_002512.2 + 180545 0.67 0.992536
Target:  5'- uCGuCGUCGAucGGCGcuuGCGGCGGGCu -3'
miRNA:   3'- -GC-GCAGCUu-CUGCuucUGCUGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.