miRNA display CGI


Results 101 - 120 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 114330 0.67 0.992536
Target:  5'- aGCGUUcuuGACGcgcGCGGCGGGCGa -3'
miRNA:   3'- gCGCAGcuuCUGCuucUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 30585 0.67 0.991498
Target:  5'- gCGCGUCcuggaGGAGGCcaccaaccgGAGGGCG-CGGAUGu -3'
miRNA:   3'- -GCGCAG-----CUUCUG---------CUUCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 183603 0.67 0.991498
Target:  5'- cCGUuuGUCGGAGACuGAuGAUGACaGACa -3'
miRNA:   3'- -GCG--CAGCUUCUG-CUuCUGCUGcCUGc -5'
9131 5' -53.1 NC_002512.2 + 80667 0.67 0.991498
Target:  5'- -cCGUCGGucccgcGGCGgcGGCGACGGggGCGa -3'
miRNA:   3'- gcGCAGCUu-----CUGCuuCUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 48487 0.67 0.991498
Target:  5'- aCGCGUCcccGGCGGAGGCca-GGGCGc -3'
miRNA:   3'- -GCGCAGcuuCUGCUUCUGcugCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 13491 0.67 0.991498
Target:  5'- uGCGgcCGAAcaacACGGAGACGGCGGcCa -3'
miRNA:   3'- gCGCa-GCUUc---UGCUUCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 210442 0.67 0.991498
Target:  5'- gGCGUCGggGACu-GGACccgUGGAUGc -3'
miRNA:   3'- gCGCAGCuuCUGcuUCUGcu-GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 144268 0.67 0.991498
Target:  5'- aGCGggCGAAGuCccaGAGGCGGCGGAgGc -3'
miRNA:   3'- gCGCa-GCUUCuGc--UUCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 110962 0.67 0.991498
Target:  5'- uCGCgGUCGAuGACGAgcAGcCGcCGGugGa -3'
miRNA:   3'- -GCG-CAGCUuCUGCU--UCuGCuGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 133012 0.67 0.991498
Target:  5'- cCGcCGaCGGAGAacugggaGAAGACGACGaGCGa -3'
miRNA:   3'- -GC-GCaGCUUCUg------CUUCUGCUGCcUGC- -5'
9131 5' -53.1 NC_002512.2 + 134280 0.67 0.991498
Target:  5'- uCGUGgUGAGGGaGAAGGCGGCGacGACGa -3'
miRNA:   3'- -GCGCaGCUUCUgCUUCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 149443 0.67 0.991498
Target:  5'- gCGCGgggGGAGAgGAAGGgGACccgGGACGc -3'
miRNA:   3'- -GCGCag-CUUCUgCUUCUgCUG---CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 124524 0.67 0.991498
Target:  5'- -aCGUC-AAGGCGGgccAGACGACGG-CGc -3'
miRNA:   3'- gcGCAGcUUCUGCU---UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 123123 0.67 0.991388
Target:  5'- cCGcCGUCGGcggccgucccgggGGACGggG-CGGCGGcgccGCGa -3'
miRNA:   3'- -GC-GCAGCU-------------UCUGCuuCuGCUGCC----UGC- -5'
9131 5' -53.1 NC_002512.2 + 138030 0.67 0.990348
Target:  5'- gGCGgccUCGggGGCauGAgccgggacuGGuCGACGGACGg -3'
miRNA:   3'- gCGC---AGCuuCUG--CU---------UCuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 4495 0.67 0.990348
Target:  5'- gGCGcCGucccCGAAGAgGAUGGACGc -3'
miRNA:   3'- gCGCaGCuucuGCUUCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 38274 0.67 0.990348
Target:  5'- uCGCGcgaGAAGACGc---CGACGGACu -3'
miRNA:   3'- -GCGCag-CUUCUGCuucuGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 48778 0.67 0.990348
Target:  5'- aCGUGUCccAGACGcuGA-GGCGGGCGu -3'
miRNA:   3'- -GCGCAGcuUCUGCuuCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77306 0.67 0.990348
Target:  5'- gCGUGUCGuuucGCG-AGGCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuc-UGCuUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 100060 0.67 0.990348
Target:  5'- aCGCGggggCGgcGGCGccGACGACGagaagaGGCGg -3'
miRNA:   3'- -GCGCa---GCuuCUGCuuCUGCUGC------CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.