miRNA display CGI


Results 121 - 140 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 111021 0.67 0.990348
Target:  5'- gGUGUCGcaguccAGACGggGACGGgaguCGGAg- -3'
miRNA:   3'- gCGCAGCu-----UCUGCuuCUGCU----GCCUgc -5'
9131 5' -53.1 NC_002512.2 + 100293 0.67 0.990348
Target:  5'- cCGCGUUGgcGGCGAAGAaaUGGCauaGGuCGg -3'
miRNA:   3'- -GCGCAGCuuCUGCUUCU--GCUG---CCuGC- -5'
9131 5' -53.1 NC_002512.2 + 27773 0.67 0.990348
Target:  5'- gGCGcCaccagcuGACGAGGACGcgguCGGACGa -3'
miRNA:   3'- gCGCaGcuu----CUGCUUCUGCu---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 55539 0.67 0.990348
Target:  5'- cCGCauccCGGcGGACGAGGgcGCGGCGGACc -3'
miRNA:   3'- -GCGca--GCU-UCUGCUUC--UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 146750 0.67 0.990348
Target:  5'- cCGaCGaccUCGAcGACGggGACGACGacccgaccGACGc -3'
miRNA:   3'- -GC-GC---AGCUuCUGCuuCUGCUGC--------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 100060 0.67 0.990348
Target:  5'- aCGCGggggCGgcGGCGccGACGACGagaagaGGCGg -3'
miRNA:   3'- -GCGCa---GCuuCUGCuuCUGCUGC------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 77306 0.67 0.990348
Target:  5'- gCGUGUCGuuucGCG-AGGCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuc-UGCuUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 48778 0.67 0.990348
Target:  5'- aCGUGUCccAGACGcuGA-GGCGGGCGu -3'
miRNA:   3'- -GCGCAGcuUCUGCuuCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 38274 0.67 0.990348
Target:  5'- uCGCGcgaGAAGACGc---CGACGGACu -3'
miRNA:   3'- -GCGCag-CUUCUGCuucuGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 4495 0.67 0.990348
Target:  5'- gGCGcCGucccCGAAGAgGAUGGACGc -3'
miRNA:   3'- gCGCaGCuucuGCUUCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 225952 0.67 0.990348
Target:  5'- aCGaCGaCGAcGACGAcGACGACGacGACGa -3'
miRNA:   3'- -GC-GCaGCUuCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 138030 0.67 0.990348
Target:  5'- gGCGgccUCGggGGCauGAgccgggacuGGuCGACGGACGg -3'
miRNA:   3'- gCGC---AGCuuCUG--CU---------UCuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74011 0.67 0.990348
Target:  5'- cCGcCGUCGggGACGAAcagcGugGcCGGGu- -3'
miRNA:   3'- -GC-GCAGCuuCUGCUU----CugCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 75208 0.67 0.990348
Target:  5'- cCGC-UCGGAGcCGGAcggucgcccGACGuCGGACGg -3'
miRNA:   3'- -GCGcAGCUUCuGCUU---------CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 96994 0.67 0.990348
Target:  5'- uCGCGUCGccgGGGACGccGuCGucgauuuccuccGCGGACGg -3'
miRNA:   3'- -GCGCAGC---UUCUGCuuCuGC------------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 188630 0.67 0.990227
Target:  5'- aGCGcUCGGgccgcaaGGGCGccGGCGGCGGcgGCGg -3'
miRNA:   3'- gCGC-AGCU-------UCUGCuuCUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 44421 0.67 0.990105
Target:  5'- gGCGgcaggaccacggCGAAGGagcaGAGGGCGGacaGGACGg -3'
miRNA:   3'- gCGCa-----------GCUUCUg---CUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 226411 0.67 0.989981
Target:  5'- gGCGgCGAcGAUGGAGAUGGCgagaaaggaugaggGGGCGg -3'
miRNA:   3'- gCGCaGCUuCUGCUUCUGCUG--------------CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74916 0.67 0.989603
Target:  5'- aCGCGgaggccCGGAGGCGGaucgcggaccgcgggAGAgCGACgGGACGa -3'
miRNA:   3'- -GCGCa-----GCUUCUGCU---------------UCU-GCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 157817 0.67 0.989081
Target:  5'- uGCuGUUGAGGAUGggGuuCGAccCGGugGa -3'
miRNA:   3'- gCG-CAGCUUCUGCuuCu-GCU--GCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.