miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 204824 0.67 0.989081
Target:  5'- gGCG-CGgcGGCuccguccggGAGGACGACGG-CGg -3'
miRNA:   3'- gCGCaGCuuCUG---------CUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 102417 0.67 0.989081
Target:  5'- cCGCGUCcggacggcaGAGuauuagauguGACGGAGAgGACGcGGCGg -3'
miRNA:   3'- -GCGCAG---------CUU----------CUGCUUCUgCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 24262 0.67 0.989081
Target:  5'- cCGCGggcaGGaaGGACGgcGGCGACGGcaucccGCGg -3'
miRNA:   3'- -GCGCag--CU--UCUGCuuCUGCUGCC------UGC- -5'
9131 5' -53.1 NC_002512.2 + 56334 0.67 0.989081
Target:  5'- aGCG-CGAguAGACGGcacagcccgggcAGAcggcccCGACGGACGg -3'
miRNA:   3'- gCGCaGCU--UCUGCU------------UCU------GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 93551 0.67 0.989081
Target:  5'- cCGCGaCGggGACcugaugGGAGACaucGCGGugGa -3'
miRNA:   3'- -GCGCaGCuuCUG------CUUCUGc--UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 119340 0.67 0.989081
Target:  5'- cCGCG-CGggGGCGGAaACGcCGGucACGg -3'
miRNA:   3'- -GCGCaGCuuCUGCUUcUGCuGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 163458 0.67 0.989081
Target:  5'- aCGUGUCGucgguGGACGAuaucaaGAUGGACa -3'
miRNA:   3'- -GCGCAGCu----UCUGCUucug--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 119769 0.67 0.989081
Target:  5'- aCGCGUCGcGGuCGAcGGCGG-GGACc -3'
miRNA:   3'- -GCGCAGCuUCuGCUuCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 157817 0.67 0.989081
Target:  5'- uGCuGUUGAGGAUGggGuuCGAccCGGugGa -3'
miRNA:   3'- gCG-CAGCUUCUGCuuCu-GCU--GCCugC- -5'
9131 5' -53.1 NC_002512.2 + 6395 0.67 0.989081
Target:  5'- uCGCGaCGGGcAgGGAGGCGGCGG-CGg -3'
miRNA:   3'- -GCGCaGCUUcUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 45455 0.67 0.989081
Target:  5'- cCGaCGcCGgcGGCGGccgAGGCGACGGAg- -3'
miRNA:   3'- -GC-GCaGCuuCUGCU---UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 49399 0.67 0.989081
Target:  5'- aGCGUucgCGAcGGACGAAGGacugGACGcGACGc -3'
miRNA:   3'- gCGCA---GCU-UCUGCUUCUg---CUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 227241 0.67 0.988676
Target:  5'- gCGCGgCGGacgggcgggcaucaGGACGAgcgacaGGACGGCGGAg- -3'
miRNA:   3'- -GCGCaGCU--------------UCUGCU------UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 91011 0.67 0.98826
Target:  5'- gGCGUCGGAGgcccaucagcgggauACGggGACugguGCGGgaGCGg -3'
miRNA:   3'- gCGCAGCUUC---------------UGCuuCUGc---UGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 227894 0.67 0.98826
Target:  5'- aCGCGggcgaguccgaggcCGGAGACGGAcgcgccgccuccGACGccgGCGGACGa -3'
miRNA:   3'- -GCGCa-------------GCUUCUGCUU------------CUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228113 0.67 0.98826
Target:  5'- gGCGUCGGccgcaacgucgugcuGGGCGc---CGACGGGCGc -3'
miRNA:   3'- gCGCAGCU---------------UCUGCuucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 79930 0.67 0.987687
Target:  5'- gGC-UCGAAGGCcGAGGCGGCGcGGgGg -3'
miRNA:   3'- gCGcAGCUUCUGcUUCUGCUGC-CUgC- -5'
9131 5' -53.1 NC_002512.2 + 10935 0.67 0.987687
Target:  5'- gGCGaCGGAGGgGucGACGA-GGACGc -3'
miRNA:   3'- gCGCaGCUUCUgCuuCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 71245 0.67 0.987687
Target:  5'- uCGaCGUCGggGuCGAAGGgGuCGGAg- -3'
miRNA:   3'- -GC-GCAGCuuCuGCUUCUgCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 46720 0.67 0.987687
Target:  5'- gGCGUaCGucauGGCGgcGGCGGCGGGg- -3'
miRNA:   3'- gCGCA-GCuu--CUGCuuCUGCUGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.