miRNA display CGI


Results 161 - 180 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 79930 0.67 0.987687
Target:  5'- gGC-UCGAAGGCcGAGGCGGCGcGGgGg -3'
miRNA:   3'- gCGcAGCUUCUGcUUCUGCUGC-CUgC- -5'
9131 5' -53.1 NC_002512.2 + 10935 0.67 0.987687
Target:  5'- gGCGaCGGAGGgGucGACGA-GGACGc -3'
miRNA:   3'- gCGCaGCUUCUgCuuCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 46720 0.67 0.987687
Target:  5'- gGCGUaCGucauGGCGgcGGCGGCGGGg- -3'
miRNA:   3'- gCGCA-GCuu--CUGCuuCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 71245 0.67 0.987687
Target:  5'- uCGaCGUCGggGuCGAAGGgGuCGGAg- -3'
miRNA:   3'- -GC-GCAGCuuCuGCUUCUgCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 120613 0.67 0.987687
Target:  5'- gGCGcCGGugAGAgcgGGAGGCGGCgGGACGg -3'
miRNA:   3'- gCGCaGCU--UCUg--CUUCUGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 14945 0.67 0.987687
Target:  5'- uGCGUCcgcggccacggGAGGACGAAccgcGGCcGCGGugGa -3'
miRNA:   3'- gCGCAG-----------CUUCUGCUU----CUGcUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 43091 0.67 0.987687
Target:  5'- gCGCGgCGAGcaGCGggGACGGCucgagGGACa -3'
miRNA:   3'- -GCGCaGCUUc-UGCuuCUGCUG-----CCUGc -5'
9131 5' -53.1 NC_002512.2 + 226596 0.67 0.98754
Target:  5'- gCGCGgccCGggGGaggaGggGACGGCGacgcagcGACGg -3'
miRNA:   3'- -GCGCa--GCuuCUg---CuuCUGCUGC-------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 51950 0.67 0.98754
Target:  5'- aGCuGUCGGAcGCGGAGccgccgaGCGACGaGACGc -3'
miRNA:   3'- gCG-CAGCUUcUGCUUC-------UGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 204914 0.67 0.987243
Target:  5'- --gGUCGGGuGACGggGACGGguucgacucccuccUGGACGu -3'
miRNA:   3'- gcgCAGCUU-CUGCuuCUGCU--------------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 226707 0.67 0.986787
Target:  5'- aCGaCGUCGAcgcgaaacgaguagAGAcagcgaggcuguccCGGAGACGGCGGAgGc -3'
miRNA:   3'- -GC-GCAGCU--------------UCU--------------GCUUCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 224799 0.67 0.986159
Target:  5'- cCGCGcCGAcgccGGCGAcGACGaccaacgccGCGGGCGg -3'
miRNA:   3'- -GCGCaGCUu---CUGCUuCUGC---------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 114036 0.67 0.986159
Target:  5'- gGCG-CGGuGGACGuAGAgGGCGGGCc -3'
miRNA:   3'- gCGCaGCU-UCUGCuUCUgCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 84017 0.67 0.986159
Target:  5'- --gGUCGccGACGAAGuugaaGACGGGCa -3'
miRNA:   3'- gcgCAGCuuCUGCUUCug---CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 53497 0.67 0.986159
Target:  5'- aCGCGgcgCGGAcGAuCGAAGA-GAUGGugGg -3'
miRNA:   3'- -GCGCa--GCUU-CU-GCUUCUgCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 63769 0.67 0.986159
Target:  5'- gGUGUCGAgcuuguaguuggGGGCGGAGGucuUGGCGGAg- -3'
miRNA:   3'- gCGCAGCU------------UCUGCUUCU---GCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 36703 0.67 0.986159
Target:  5'- aCGCgGUCGAAGAaGAAGGCGACc---- -3'
miRNA:   3'- -GCG-CAGCUUCUgCUUCUGCUGccugc -5'
9131 5' -53.1 NC_002512.2 + 26225 0.67 0.986159
Target:  5'- gGCGaCGGAGACG-GGACcgguAUGGACGu -3'
miRNA:   3'- gCGCaGCUUCUGCuUCUGc---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 82731 0.67 0.986159
Target:  5'- gGCGUcuaauacugCGAGGGCGGAGAgauuuUGACGGuCa -3'
miRNA:   3'- gCGCA---------GCUUCUGCUUCU-----GCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 113469 0.67 0.986159
Target:  5'- aGCGggagaCGGAGAaccaCGAGGGCGucaGGGCGa -3'
miRNA:   3'- gCGCa----GCUUCU----GCUUCUGCug-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.