miRNA display CGI


Results 61 - 80 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 28059 0.72 0.906096
Target:  5'- cCGCGgaaGGAGcccccgggcgcgGCGGAGACGGCGGAg- -3'
miRNA:   3'- -GCGCag-CUUC------------UGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 29266 0.71 0.933248
Target:  5'- gGaCGagGAGGACGAAGAgGAggaGGACGa -3'
miRNA:   3'- gC-GCagCUUCUGCUUCUgCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 29748 0.66 0.995059
Target:  5'- gCGCG-CGAGGGggccCGgcGAuCGACGcGACGg -3'
miRNA:   3'- -GCGCaGCUUCU----GCuuCU-GCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 29967 0.68 0.9807
Target:  5'- gGCGgccggccgCGAacGGACGAcAGAC-ACGGGCGg -3'
miRNA:   3'- gCGCa-------GCU--UCUGCU-UCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 30401 0.74 0.819453
Target:  5'- uCGCGgcccUGAcGGACGggGACG-CGGGCGu -3'
miRNA:   3'- -GCGCa---GCU-UCUGCuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 30585 0.67 0.991498
Target:  5'- gCGCGUCcuggaGGAGGCcaccaaccgGAGGGCG-CGGAUGu -3'
miRNA:   3'- -GCGCAG-----CUUCUG---------CUUCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 31240 0.71 0.933248
Target:  5'- uGCGUuucgUGAGGGCGcugauGGACG-CGGACGu -3'
miRNA:   3'- gCGCA----GCUUCUGCu----UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 31682 0.73 0.873464
Target:  5'- gGCGgaCGggGAgGAGGACG-CGGACc -3'
miRNA:   3'- gCGCa-GCuuCUgCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 32436 0.66 0.995059
Target:  5'- aGCGggCGAGGGaGAAGGaGuCGGACGg -3'
miRNA:   3'- gCGCa-GCUUCUgCUUCUgCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 32727 0.68 0.984491
Target:  5'- gGCG-CG-GGugGAAGACGGcCGuGGCGa -3'
miRNA:   3'- gCGCaGCuUCugCUUCUGCU-GC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 33004 0.66 0.996318
Target:  5'- aCGcCGUCGAugAGcauccGCGGcAGAgCGACGGGCa -3'
miRNA:   3'- -GC-GCAGCU--UC-----UGCU-UCU-GCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 33261 0.72 0.899999
Target:  5'- gGCGUCGGccacccGGGCGAaccgggAGAUGguGCGGACGu -3'
miRNA:   3'- gCGCAGCU------UCUGCU------UCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 33439 0.66 0.995059
Target:  5'- uCGUGaUCGGAGaacuGCGAucuccGGuCGugGGACGa -3'
miRNA:   3'- -GCGC-AGCUUC----UGCU-----UCuGCugCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 33812 0.68 0.982673
Target:  5'- aGCG-CGAgcaGGGCGAAGGCccCGGugGc -3'
miRNA:   3'- gCGCaGCU---UCUGCUUCUGcuGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 34411 0.68 0.9807
Target:  5'- aGC-UCGcGGuGCGAGGAgUGACGGACGu -3'
miRNA:   3'- gCGcAGCuUC-UGCUUCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 34910 0.73 0.851422
Target:  5'- uGCGcCGAgaggaGGACG-AGACGACGG-CGg -3'
miRNA:   3'- gCGCaGCU-----UCUGCuUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 36116 0.69 0.96195
Target:  5'- gGCuGUaaaacaGAGGACGGAGGCGACGaccGCGa -3'
miRNA:   3'- gCG-CAg-----CUUCUGCUUCUGCUGCc--UGC- -5'
9131 5' -53.1 NC_002512.2 + 36219 0.69 0.965201
Target:  5'- cCGacUCGGAGACGGucccgaGGACGACGG-CGa -3'
miRNA:   3'- -GCgcAGCUUCUGCU------UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 36564 0.66 0.995726
Target:  5'- cCGC--UGGAGcCgGGAGGCGGCGGugGa -3'
miRNA:   3'- -GCGcaGCUUCuG-CUUCUGCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 36703 0.67 0.986159
Target:  5'- aCGCgGUCGAAGAaGAAGGCGACc---- -3'
miRNA:   3'- -GCG-CAGCUUCUgCUUCUGCUGccugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.