miRNA display CGI


Results 101 - 120 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 44532 0.72 0.880412
Target:  5'- uCGCaGUCGAcGGCGAuGGCGGCGGcCa -3'
miRNA:   3'- -GCG-CAGCUuCUGCUuCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 45455 0.67 0.989081
Target:  5'- cCGaCGcCGgcGGCGGccgAGGCGACGGAg- -3'
miRNA:   3'- -GC-GCaGCuuCUGCU---UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 46720 0.67 0.987687
Target:  5'- gGCGUaCGucauGGCGgcGGCGGCGGGg- -3'
miRNA:   3'- gCGCA-GCuu--CUGCuuCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 46787 0.75 0.766868
Target:  5'- aCGC-UCGAAGACcuccgucuGAAGACGAcguCGGACGa -3'
miRNA:   3'- -GCGcAGCUUCUG--------CUUCUGCU---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 48116 0.68 0.984491
Target:  5'- gGCGcUgGAGGACGuguGGACGaACGcGGCGu -3'
miRNA:   3'- gCGC-AgCUUCUGCu--UCUGC-UGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 48487 0.67 0.991498
Target:  5'- aCGCGUCcccGGCGGAGGCca-GGGCGc -3'
miRNA:   3'- -GCGCAGcuuCUGCUUCUGcugCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 48685 0.7 0.958494
Target:  5'- aCGUGUCGGAGAUcacGGGCGA-GGACc -3'
miRNA:   3'- -GCGCAGCUUCUGcu-UCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 48778 0.67 0.990348
Target:  5'- aCGUGUCccAGACGcuGA-GGCGGGCGu -3'
miRNA:   3'- -GCGCAGcuUCUGCuuCUgCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 49399 0.67 0.989081
Target:  5'- aGCGUucgCGAcGGACGAAGGacugGACGcGACGc -3'
miRNA:   3'- gCGCA---GCU-UCUGCUUCUg---CUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 49721 0.68 0.985176
Target:  5'- aCGCGUCGuaccugcucGGGACGGAGGCcguccuggaccgcccGACgcuGGACGc -3'
miRNA:   3'- -GCGCAGC---------UUCUGCUUCUG---------------CUG---CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51006 0.69 0.96195
Target:  5'- aCGCGUucgUGGAGAacaaccCGcuGACGACGGACc -3'
miRNA:   3'- -GCGCA---GCUUCU------GCuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 51110 0.66 0.994309
Target:  5'- gCGCugaaGUCGAAGuacauCGAGaACGACGcGACGu -3'
miRNA:   3'- -GCG----CAGCUUCu----GCUUcUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 51298 0.7 0.958494
Target:  5'- gGCGgCGGccAGACuGAAGAgccUGACGGACGc -3'
miRNA:   3'- gCGCaGCU--UCUG-CUUCU---GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51356 0.83 0.359024
Target:  5'- uCGaUGcCGGAGACGGAGAUGGCGGACGc -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51527 0.69 0.965201
Target:  5'- aCGcCGUCGGAGGagaucCGGAGACuGCgGGGCGa -3'
miRNA:   3'- -GC-GCAGCUUCU-----GCUUCUGcUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51626 0.68 0.976257
Target:  5'- ---aUCGAAGACau-GGCGACGGACc -3'
miRNA:   3'- gcgcAGCUUCUGcuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 51732 0.72 0.906096
Target:  5'- -aCGUCGAacGGGCGGAGAgGcugcuGCGGACGc -3'
miRNA:   3'- gcGCAGCU--UCUGCUUCUgC-----UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 51776 0.66 0.995726
Target:  5'- aGCGagGAGGAC-AAGAaaGCGGugGa -3'
miRNA:   3'- gCGCagCUUCUGcUUCUgcUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 51950 0.67 0.98754
Target:  5'- aGCuGUCGGAcGCGGAGccgccgaGCGACGaGACGc -3'
miRNA:   3'- gCG-CAGCUUcUGCUUC-------UGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 52637 0.73 0.866312
Target:  5'- uGCGggaGGAGcUGGAGGCGACGGAgCGg -3'
miRNA:   3'- gCGCag-CUUCuGCUUCUGCUGCCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.