miRNA display CGI


Results 121 - 140 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 52796 0.69 0.968252
Target:  5'- uCGCGgagaCGcAG-CGggGGCuGACGGACGc -3'
miRNA:   3'- -GCGCa---GCuUCuGCuuCUG-CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 53368 0.66 0.995726
Target:  5'- aCGUGaCGGccaagcGGGCGcuggaauGGACGACGGGCu -3'
miRNA:   3'- -GCGCaGCU------UCUGCu------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 53380 0.74 0.835785
Target:  5'- aCGCucCGGAGAcCGAGGACGAgGGACc -3'
miRNA:   3'- -GCGcaGCUUCU-GCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 53497 0.67 0.986159
Target:  5'- aCGCGgcgCGGAcGAuCGAAGA-GAUGGugGg -3'
miRNA:   3'- -GCGCa--GCUU-CU-GCUUCUgCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 53535 0.71 0.923059
Target:  5'- aCGCGacUGGAGACGGAGACGcUGGAg- -3'
miRNA:   3'- -GCGCa-GCUUCUGCUUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 54150 0.71 0.917628
Target:  5'- aCGCGuUCGGAGAgCGGAGGaucaUGAcCGGACGc -3'
miRNA:   3'- -GCGC-AGCUUCU-GCUUCU----GCU-GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 54642 0.68 0.978341
Target:  5'- gCGCGgcccUGgcGACGAuggucaccaagauGGAcCGGCGGACGg -3'
miRNA:   3'- -GCGCa---GCuuCUGCU-------------UCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 54752 0.66 0.993471
Target:  5'- uGCGUgGAcaccaAGACGuggcGGGCGGUGGACa -3'
miRNA:   3'- gCGCAgCU-----UCUGCu---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 55539 0.67 0.990348
Target:  5'- cCGCauccCGGcGGACGAGGgcGCGGCGGACc -3'
miRNA:   3'- -GCGca--GCU-UCUGCUUC--UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 55648 0.7 0.954829
Target:  5'- gGCGagGGAGGaGAGGACGAcucgacgcCGGGCGg -3'
miRNA:   3'- gCGCagCUUCUgCUUCUGCU--------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 56334 0.67 0.989081
Target:  5'- aGCG-CGAguAGACGGcacagcccgggcAGAcggcccCGACGGACGg -3'
miRNA:   3'- gCGCaGCU--UCUGCU------------UCU------GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 56584 0.75 0.784933
Target:  5'- gGCGUUGGAGcCGAuGACGgcccuccaGCGGACGg -3'
miRNA:   3'- gCGCAGCUUCuGCUuCUGC--------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57044 0.73 0.866312
Target:  5'- cCGCGUcCGAcGACcgGggGGCGcCGGGCGa -3'
miRNA:   3'- -GCGCA-GCUuCUG--CuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57200 0.75 0.775961
Target:  5'- aGCGgucgCGcAGGACGGAGACGagggccgagacGCGGGCGu -3'
miRNA:   3'- gCGCa---GC-UUCUGCUUCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57354 0.66 0.995059
Target:  5'- gGCcugGUUGggGACGggGAUGccgaaGGGCa -3'
miRNA:   3'- gCG---CAGCuuCUGCuuCUGCug---CCUGc -5'
9131 5' -53.1 NC_002512.2 + 57444 0.69 0.968252
Target:  5'- gGCGUCGAucuucuGGCGAcuguAG-CGACGGAa- -3'
miRNA:   3'- gCGCAGCUu-----CUGCU----UCuGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 57885 0.72 0.893684
Target:  5'- gGCGaCGgcGGCGAcGGCGACGG-CGa -3'
miRNA:   3'- gCGCaGCuuCUGCUuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 57925 0.73 0.843694
Target:  5'- aGCG-CGAGGACGGcgagcgggAGAUaGACGGGCGc -3'
miRNA:   3'- gCGCaGCUUCUGCU--------UCUG-CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57957 0.67 0.987687
Target:  5'- nGCGgcgCGGcGGGCGAAGAgGGC-GACGa -3'
miRNA:   3'- gCGCa--GCU-UCUGCUUCUgCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 57997 0.68 0.982673
Target:  5'- aGUccCGggGACGAGGGgGACgccgaGGACGg -3'
miRNA:   3'- gCGcaGCuuCUGCUUCUgCUG-----CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.