miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 59306 0.66 0.996318
Target:  5'- uCGgGUCG-GGACac-GGCGACGGAgGa -3'
miRNA:   3'- -GCgCAGCuUCUGcuuCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 60318 0.69 0.973774
Target:  5'- gGCGgacgCGGAGACGccGGCGAaggccacgccgcCGGGCa -3'
miRNA:   3'- gCGCa---GCUUCUGCuuCUGCU------------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 60401 0.69 0.96195
Target:  5'- uGCGgc-AGGugGggGugGugGGACu -3'
miRNA:   3'- gCGCagcUUCugCuuCugCugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 60790 0.78 0.601828
Target:  5'- aCGCcccgCGAGGACGAGGACG-CGGGCc -3'
miRNA:   3'- -GCGca--GCUUCUGCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 60941 0.71 0.926727
Target:  5'- uCGCGUCGGAGAgCGAGuACGccaacgugaaacugGCGGACc -3'
miRNA:   3'- -GCGCAGCUUCU-GCUUcUGC--------------UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 62227 0.75 0.782254
Target:  5'- aCGCGUccugCGAgaggaccgacgagaGGACGAgcuGGGCGACGGGCa -3'
miRNA:   3'- -GCGCA----GCU--------------UCUGCU---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 62300 0.71 0.93276
Target:  5'- gGCGUCGcaGAGGCGGcggaugaccgggaAGAagcCGACGGGCa -3'
miRNA:   3'- gCGCAGC--UUCUGCU-------------UCU---GCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 62424 0.7 0.954829
Target:  5'- -aCGUCGAcGAccuCGGAGACGAugcucCGGACGa -3'
miRNA:   3'- gcGCAGCUuCU---GCUUCUGCU-----GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 63193 0.69 0.968252
Target:  5'- gGCGaaaUCGAAGACGAGGAUaggguuAUGGugGu -3'
miRNA:   3'- gCGC---AGCUUCUGCUUCUGc-----UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 63769 0.67 0.986159
Target:  5'- gGUGUCGAgcuuguaguuggGGGCGGAGGucuUGGCGGAg- -3'
miRNA:   3'- gCGCAGCU------------UCUGCUUCU---GCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 66087 0.66 0.995059
Target:  5'- aGCuGUUGAcGAacuugaaGAGGACGugGGGCc -3'
miRNA:   3'- gCG-CAGCUuCUg------CUUCUGCugCCUGc -5'
9131 5' -53.1 NC_002512.2 + 67998 0.68 0.9807
Target:  5'- gGCG-CGAGGA-GAGGgaGCGACGaGACGc -3'
miRNA:   3'- gCGCaGCUUCUgCUUC--UGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 70990 0.76 0.719883
Target:  5'- cCGCGacCGAGGACG-GGACGAaGGACGg -3'
miRNA:   3'- -GCGCa-GCUUCUGCuUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 71134 0.67 0.990348
Target:  5'- cCGCGaCGGAGuuaGucGACGAUGGaACGg -3'
miRNA:   3'- -GCGCaGCUUCug-CuuCUGCUGCC-UGC- -5'
9131 5' -53.1 NC_002512.2 + 71245 0.67 0.987687
Target:  5'- uCGaCGUCGggGuCGAAGGgGuCGGAg- -3'
miRNA:   3'- -GC-GCAGCuuCuGCUUCUgCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 71550 0.75 0.766868
Target:  5'- gGUGUCGAAGACGGuccGGAgcGCGGACu -3'
miRNA:   3'- gCGCAGCUUCUGCU---UCUgcUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 71888 0.66 0.996535
Target:  5'- gGCGUCGAAcuccucccggucgccGAUGucGACGcuguCGGGCa -3'
miRNA:   3'- gCGCAGCUU---------------CUGCuuCUGCu---GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 73149 0.74 0.835785
Target:  5'- uGCgGUUGAAGuACc-AGACGACGGACGa -3'
miRNA:   3'- gCG-CAGCUUC-UGcuUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 73227 0.69 0.965201
Target:  5'- aCGCGUCGucgcGGGCGAAGGuccccuCGAaGGGCa -3'
miRNA:   3'- -GCGCAGCu---UCUGCUUCU------GCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 73516 0.68 0.982673
Target:  5'- gGCGaaGAacaGGGCGccGACGugGGugGa -3'
miRNA:   3'- gCGCagCU---UCUGCuuCUGCugCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.