miRNA display CGI


Results 161 - 180 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 74011 0.67 0.990348
Target:  5'- cCGcCGUCGggGACGAAcagcGugGcCGGGu- -3'
miRNA:   3'- -GC-GCAGCuuCUGCUU----CugCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 74330 0.69 0.973774
Target:  5'- uGcCGUaGAAGAgGAAGACGAagGGACa -3'
miRNA:   3'- gC-GCAgCUUCUgCUUCUGCUg-CCUGc -5'
9131 5' -53.1 NC_002512.2 + 74633 0.68 0.9807
Target:  5'- cCGCGagcCGucGACGcc-GCGACGGGCGg -3'
miRNA:   3'- -GCGCa--GCuuCUGCuucUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 74875 0.66 0.994309
Target:  5'- cCGCaccCG-GGACGAcGGGCGACGGAUc -3'
miRNA:   3'- -GCGca-GCuUCUGCU-UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 74916 0.67 0.989603
Target:  5'- aCGCGgaggccCGGAGGCGGaucgcggaccgcgggAGAgCGACgGGACGa -3'
miRNA:   3'- -GCGCa-----GCUUCUGCU---------------UCU-GCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 75029 0.72 0.887154
Target:  5'- aGgGcCGggGACGAGGggacgcACGACGGAgGg -3'
miRNA:   3'- gCgCaGCuuCUGCUUC------UGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 75208 0.67 0.990348
Target:  5'- cCGC-UCGGAGcCGGAcggucgcccGACGuCGGACGg -3'
miRNA:   3'- -GCGcAGCUUCuGCUU---------CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 75276 0.71 0.928266
Target:  5'- gGCGgCGAcGGCGgcGGCGGCGG-CGa -3'
miRNA:   3'- gCGCaGCUuCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 75342 0.8 0.533514
Target:  5'- gGCGaCcGAGGCGGAGGCGGCGGACc -3'
miRNA:   3'- gCGCaGcUUCUGCUUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 75548 0.74 0.827703
Target:  5'- cCGUGgcgGAGGACGAcGACG-CGGACGa -3'
miRNA:   3'- -GCGCag-CUUCUGCUuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 75760 0.73 0.850657
Target:  5'- gCGCGUCGGAGACcgcggagcccggGAGGACGgggcagaGCGGGgGa -3'
miRNA:   3'- -GCGCAGCUUCUG------------CUUCUGC-------UGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 76095 0.66 0.994309
Target:  5'- gGCGaUCGGaagcugAGGCGggGGCGcCGGGg- -3'
miRNA:   3'- gCGC-AGCU------UCUGCuuCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 76584 0.77 0.680974
Target:  5'- gCGCGUCG-AGAUGAAcgccGGCGuCGGACGu -3'
miRNA:   3'- -GCGCAGCuUCUGCUU----CUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77086 0.66 0.996318
Target:  5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3'
miRNA:   3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 77216 0.75 0.784933
Target:  5'- uGCGUCGAGcGACcgGGAGGCGAacgagcgccCGGGCGg -3'
miRNA:   3'- gCGCAGCUU-CUG--CUUCUGCU---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77306 0.67 0.990348
Target:  5'- gCGUGUCGuuucGCG-AGGCGACGGGg- -3'
miRNA:   3'- -GCGCAGCuuc-UGCuUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 77500 0.71 0.911973
Target:  5'- cCGCGUCGAAcaaugcGACGggG-CGACcGGuCGa -3'
miRNA:   3'- -GCGCAGCUU------CUGCuuCuGCUG-CCuGC- -5'
9131 5' -53.1 NC_002512.2 + 79930 0.67 0.987687
Target:  5'- gGC-UCGAAGGCcGAGGCGGCGcGGgGg -3'
miRNA:   3'- gCGcAGCUUCUGcUUCUGCUGC-CUgC- -5'
9131 5' -53.1 NC_002512.2 + 80667 0.67 0.991498
Target:  5'- -cCGUCGGucccgcGGCGgcGGCGACGGggGCGa -3'
miRNA:   3'- gcGCAGCUu-----CUGCuuCUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 80702 0.8 0.505047
Target:  5'- gGCGUCcgGggGGCGAGGGCGcgcgggcccGCGGGCGg -3'
miRNA:   3'- gCGCAG--CuuCUGCUUCUGC---------UGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.