miRNA display CGI


Results 41 - 60 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 223911 0.66 0.996318
Target:  5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3'
miRNA:   3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 223833 0.69 0.96195
Target:  5'- gCGCGUCGGAGGgGAAGGaggaGGCcgaGGAgGa -3'
miRNA:   3'- -GCGCAGCUUCUgCUUCUg---CUG---CCUgC- -5'
9131 5' -53.1 NC_002512.2 + 223801 0.7 0.958494
Target:  5'- gGaCGUCGgcGGCGAccgccgGGACGAC-GACGg -3'
miRNA:   3'- gC-GCAGCuuCUGCU------UCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 223101 0.66 0.994309
Target:  5'- uGCGUCGAcggGGAgGggGAUccGCGGGuCGa -3'
miRNA:   3'- gCGCAGCU---UCUgCuuCUGc-UGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 221589 0.66 0.996318
Target:  5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3'
miRNA:   3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 221394 0.68 0.9807
Target:  5'- gGCGgggCGcGGGCGGggAGGCGGCGGGu- -3'
miRNA:   3'- gCGCa--GCuUCUGCU--UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 221282 0.68 0.9807
Target:  5'- gCGCGUgGAGGGgGggGAggccgggguCGGCGGggaGCGg -3'
miRNA:   3'- -GCGCAgCUUCUgCuuCU---------GCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 220676 0.73 0.851422
Target:  5'- cCGCGUCGugcugggcgacGGGACGGAGgucagucccuGCGACGaGACGu -3'
miRNA:   3'- -GCGCAGC-----------UUCUGCUUC----------UGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 219836 0.68 0.978564
Target:  5'- uCG-GUCGggGGguccggccCGggGGCGgaucGCGGACGg -3'
miRNA:   3'- -GCgCAGCuuCU--------GCuuCUGC----UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 219681 0.66 0.994309
Target:  5'- gCGCGccgccCGAGGACGAGGAgGAgCGucGGCGc -3'
miRNA:   3'- -GCGCa----GCUUCUGCUUCUgCU-GC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 218778 0.73 0.843694
Target:  5'- -cCGUcCGggGACGAGGccgaGGCGGACGa -3'
miRNA:   3'- gcGCA-GCuuCUGCUUCug--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 218647 0.69 0.971107
Target:  5'- uCGCGccCGGcGGACGGAGGCGGauaccCGGGCa -3'
miRNA:   3'- -GCGCa-GCU-UCUGCUUCUGCU-----GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 217898 0.66 0.995726
Target:  5'- cCGCGUCGucGAgCGgcGGuacgaGACGGugGc -3'
miRNA:   3'- -GCGCAGCuuCU-GCuuCUg----CUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 217809 0.74 0.835785
Target:  5'- gGCGUCGccGucccgauCGucGACGGCGGGCGg -3'
miRNA:   3'- gCGCAGCuuCu------GCuuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 217597 0.69 0.965201
Target:  5'- cCGCcUCGggGGuCGucGGCGAcuCGGGCGg -3'
miRNA:   3'- -GCGcAGCuuCU-GCuuCUGCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 216801 0.73 0.851422
Target:  5'- gGCGUCGuuGACGAuGGCGucGCGGGuCGg -3'
miRNA:   3'- gCGCAGCuuCUGCUuCUGC--UGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 216030 0.68 0.984491
Target:  5'- aGCG-CGGuauaGGGCGcgcGAGuGCGACGGGCGu -3'
miRNA:   3'- gCGCaGCU----UCUGC---UUC-UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 215141 0.67 0.987687
Target:  5'- cCGCG-CGAcGGgGGAGGCGACGaGCa -3'
miRNA:   3'- -GCGCaGCUuCUgCUUCUGCUGCcUGc -5'
9131 5' -53.1 NC_002512.2 + 213642 0.73 0.858963
Target:  5'- cCGCGggCGAcGGCGAcGACGACGauGACGg -3'
miRNA:   3'- -GCGCa-GCUuCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 213094 0.68 0.978564
Target:  5'- -uCGUCGgcGGCGAGGACGACa---- -3'
miRNA:   3'- gcGCAGCuuCUGCUUCUGCUGccugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.