miRNA display CGI


Results 81 - 100 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 204696 0.7 0.942542
Target:  5'- uCGCGgCGGAcgcGACGucGGCGACGG-CGg -3'
miRNA:   3'- -GCGCaGCUU---CUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 204613 0.71 0.923059
Target:  5'- aGCGagGAGGAgGAcGACGACgaaggGGACGg -3'
miRNA:   3'- gCGCagCUUCUgCUuCUGCUG-----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 203106 0.66 0.994309
Target:  5'- aCGUcUCGAAGGCcAGGGCGuCGGcCGa -3'
miRNA:   3'- -GCGcAGCUUCUGcUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 202512 0.84 0.315008
Target:  5'- gGCGgCGGAGGCGGAGGCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCUUCUGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 201753 0.67 0.985999
Target:  5'- gGCGcCGAucccgggGGACGGgagGGACGagggugagagcGCGGACGg -3'
miRNA:   3'- gCGCaGCU-------UCUGCU---UCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 201724 0.73 0.873464
Target:  5'- uCGuCGUCGcGGGgGGAGACGACGGcUGg -3'
miRNA:   3'- -GC-GCAGCuUCUgCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 201343 0.66 0.995726
Target:  5'- aGCGUgGccGACaucgGgcGGCGGCGGACc -3'
miRNA:   3'- gCGCAgCuuCUG----CuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 200795 0.72 0.893684
Target:  5'- cCGcCGcCGAAGACGAGGcGgGACGcGACGg -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUC-UgCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 200268 0.75 0.775961
Target:  5'- aCGaCGaCGggGACGAGGACGACGaGCc -3'
miRNA:   3'- -GC-GCaGCuuCUGCUUCUGCUGCcUGc -5'
9131 5' -53.1 NC_002512.2 + 199656 0.67 0.990348
Target:  5'- cCGCGgacggaGGAGGgGGAGAUGACGuACGu -3'
miRNA:   3'- -GCGCag----CUUCUgCUUCUGCUGCcUGC- -5'
9131 5' -53.1 NC_002512.2 + 199504 0.66 0.994309
Target:  5'- cCGCGagGAucAGGuCGAGGuCGuCGGGCGa -3'
miRNA:   3'- -GCGCagCU--UCU-GCUUCuGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 198007 0.8 0.486437
Target:  5'- aGCGggCGAcGGACGggGGCGAgGGACGc -3'
miRNA:   3'- gCGCa-GCU-UCUGCuuCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 196407 0.75 0.757663
Target:  5'- gGCG-CGggGACGcggGGGGCGGCGGcCGg -3'
miRNA:   3'- gCGCaGCuuCUGC---UUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 196160 0.69 0.971107
Target:  5'- uCGCuccgGUCGAcgagGGGCGAgcccgaggGGGCGACGGcCGg -3'
miRNA:   3'- -GCG----CAGCU----UCUGCU--------UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 195616 0.66 0.996318
Target:  5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3'
miRNA:   3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 195011 0.71 0.917628
Target:  5'- gGCGguccCGgcGGCGgcGACGACGG-CGa -3'
miRNA:   3'- gCGCa---GCuuCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 194851 0.66 0.993471
Target:  5'- uCGUGUUGAAcaACGAAGAUGuCGGAg- -3'
miRNA:   3'- -GCGCAGCUUc-UGCUUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 194264 0.72 0.887154
Target:  5'- uCGCGgccgccgaGGAGugGAAGAUGGCGGccaGCGu -3'
miRNA:   3'- -GCGCag------CUUCugCUUCUGCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 191460 0.75 0.784933
Target:  5'- gGCGUUGAGGugGGccgaguacgAGGCGcCGGACa -3'
miRNA:   3'- gCGCAGCUUCugCU---------UCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 191277 0.72 0.899999
Target:  5'- gGCGgCGAcGGgGAGGGCGGCgGGGCGg -3'
miRNA:   3'- gCGCaGCUuCUgCUUCUGCUG-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.