miRNA display CGI


Results 101 - 120 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 191084 0.71 0.933248
Target:  5'- uGCGgc-AAGugGggGugGAUGGugGg -3'
miRNA:   3'- gCGCagcUUCugCuuCugCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 190887 0.73 0.851422
Target:  5'- cCGCGUCGcGGGGCG-AGGCGAacCGGAgGa -3'
miRNA:   3'- -GCGCAGC-UUCUGCuUCUGCU--GCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 190817 0.7 0.954829
Target:  5'- cCG-GUCGAauGGAauCGGAGACGuGCGGACa -3'
miRNA:   3'- -GCgCAGCU--UCU--GCUUCUGC-UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 189900 0.72 0.906096
Target:  5'- gGCGaggaCGgcGGCGAGGACGGCGGcucCGg -3'
miRNA:   3'- gCGCa---GCuuCUGCUUCUGCUGCCu--GC- -5'
9131 5' -53.1 NC_002512.2 + 189872 0.89 0.171159
Target:  5'- gCGCGUCGGAGACGGcggAGACGGCGG-CGg -3'
miRNA:   3'- -GCGCAGCUUCUGCU---UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 188916 0.7 0.954829
Target:  5'- gCGCgGUCGGAGagucccggugGCGggGcGCGGCGGuCGg -3'
miRNA:   3'- -GCG-CAGCUUC----------UGCuuC-UGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 188683 0.68 0.984491
Target:  5'- gGCGgucUCGggGACGAucACGGCGG-Cu -3'
miRNA:   3'- gCGC---AGCuuCUGCUucUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 188630 0.67 0.990227
Target:  5'- aGCGcUCGGgccgcaaGGGCGccGGCGGCGGcgGCGg -3'
miRNA:   3'- gCGC-AGCU-------UCUGCuuCUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 188360 0.71 0.914262
Target:  5'- cCGCGUCGcGAGACccgaguugccgcacgGGAGAUGGCGGGg- -3'
miRNA:   3'- -GCGCAGC-UUCUG---------------CUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 187237 0.68 0.984491
Target:  5'- uCGCGUCGcuucGuCGAAcccuccgcguuGAUGGCGGACGu -3'
miRNA:   3'- -GCGCAGCuu--CuGCUU-----------CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 187022 0.77 0.680974
Target:  5'- gGCGUgGAGGAgGAGGACGA-GGACc -3'
miRNA:   3'- gCGCAgCUUCUgCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 184735 0.73 0.843694
Target:  5'- gCGCGcaUCGAcGACguGAGGAuCGGCGGGCGg -3'
miRNA:   3'- -GCGC--AGCUuCUG--CUUCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 184535 0.69 0.971107
Target:  5'- uCGCGgggucagcCGgcGGCGcGGGcCGGCGGACGg -3'
miRNA:   3'- -GCGCa-------GCuuCUGCuUCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 183603 0.67 0.991498
Target:  5'- cCGUuuGUCGGAGACuGAuGAUGACaGACa -3'
miRNA:   3'- -GCG--CAGCUUCUG-CUuCUGCUGcCUGc -5'
9131 5' -53.1 NC_002512.2 + 180545 0.67 0.992536
Target:  5'- uCGuCGUCGAucGGCGcuuGCGGCGGGCu -3'
miRNA:   3'- -GC-GCAGCUu-CUGCuucUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 173647 0.69 0.969417
Target:  5'- cCGgGUCGggGGCGGcggcagcaagaaggaGGACGAgCGG-CGc -3'
miRNA:   3'- -GCgCAGCuuCUGCU---------------UCUGCU-GCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 172132 0.7 0.954829
Target:  5'- -cCGUCGAcGAgGAGcGCGACGGGCa -3'
miRNA:   3'- gcGCAGCUuCUgCUUcUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 170815 0.71 0.917628
Target:  5'- aGCGaCGggGGCGGcaGCGGCGGcaGCGg -3'
miRNA:   3'- gCGCaGCuuCUGCUucUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 170784 0.68 0.984491
Target:  5'- gCGCGaUCGgcG-CGAcGACGGCGG-CGa -3'
miRNA:   3'- -GCGC-AGCuuCuGCUuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 168137 0.66 0.994309
Target:  5'- cCGCGgCGAggggcugggGGugGggGGCGGagaggGGACGc -3'
miRNA:   3'- -GCGCaGCU---------UCugCuuCUGCUg----CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.