miRNA display CGI


Results 121 - 140 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 167731 0.68 0.9807
Target:  5'- -uCGUCGAgcgGGGCGAGGAgcUGcCGGGCGu -3'
miRNA:   3'- gcGCAGCU---UCUGCUUCU--GCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 167223 0.69 0.964885
Target:  5'- uGUGUUGggGgugagugACGguGACGAUGGugGa -3'
miRNA:   3'- gCGCAGCuuC-------UGCuuCUGCUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 166530 0.71 0.928266
Target:  5'- cCGaCGgUGAGGACGAAGACGAUcccgagggaggGGAUGa -3'
miRNA:   3'- -GC-GCaGCUUCUGCUUCUGCUG-----------CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 166467 0.81 0.441422
Target:  5'- gGC-UCGAGGGCGggGACGGCGGgaccGCGg -3'
miRNA:   3'- gCGcAGCUUCUGCuuCUGCUGCC----UGC- -5'
9131 5' -53.1 NC_002512.2 + 163458 0.67 0.989081
Target:  5'- aCGUGUCGucgguGGACGAuaucaaGAUGGACa -3'
miRNA:   3'- -GCGCAGCu----UCUGCUucug--CUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 161695 0.81 0.477254
Target:  5'- gCGCGUgGAAGAUGGAGACG-CGGcCGg -3'
miRNA:   3'- -GCGCAgCUUCUGCUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 159097 0.77 0.680974
Target:  5'- uGCGcaaCGgcGACGAGGACGACGGGa- -3'
miRNA:   3'- gCGCa--GCuuCUGCUUCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 158982 0.71 0.923059
Target:  5'- gGCGgccaCGGcgGGGCGGAGGCGGCGGccccgGCGu -3'
miRNA:   3'- gCGCa---GCU--UCUGCUUCUGCUGCC-----UGC- -5'
9131 5' -53.1 NC_002512.2 + 157817 0.67 0.989081
Target:  5'- uGCuGUUGAGGAUGggGuuCGAccCGGugGa -3'
miRNA:   3'- gCG-CAGCUUCUGCuuCu-GCU--GCCugC- -5'
9131 5' -53.1 NC_002512.2 + 157258 0.66 0.994309
Target:  5'- -cCGUCGAccGGCGAGGACGuguuCGuGGCGc -3'
miRNA:   3'- gcGCAGCUu-CUGCUUCUGCu---GC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 157168 0.66 0.996318
Target:  5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3'
miRNA:   3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 157128 0.77 0.675073
Target:  5'- gGCGUCGggGGuCGGcggcgggcccggggcGGGCGGCGGGCc -3'
miRNA:   3'- gCGCAGCuuCU-GCU---------------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 157034 0.72 0.893684
Target:  5'- aCGCGgccCGGAG-CGAGGACcccggcaaGGCGGGCGu -3'
miRNA:   3'- -GCGCa--GCUUCuGCUUCUG--------CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 156518 0.66 0.995726
Target:  5'- gGCGgCGggGcGCGggGGucCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCuuC-UGCuuCU--GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 156461 0.76 0.700537
Target:  5'- gGCGgCGggGGacuCGggGGCGGCGGGCu -3'
miRNA:   3'- gCGCaGCuuCU---GCuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 155898 0.68 0.982673
Target:  5'- gGCG-CGggGACGAGucCGGCGccGACGc -3'
miRNA:   3'- gCGCaGCuuCUGCUUcuGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 155599 0.68 0.976257
Target:  5'- -cCGUCGAGGAccaCGggGACGuGCGG-CGc -3'
miRNA:   3'- gcGCAGCUUCU---GCuuCUGC-UGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 155369 0.71 0.923059
Target:  5'- gGCGcUCGAggucgGGGCGgcGGCGccgGCGGGCGa -3'
miRNA:   3'- gCGC-AGCU-----UCUGCuuCUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 154804 0.67 0.990348
Target:  5'- aGCGggagUGAGcGACGGAGgcaGCGGCGG-CGg -3'
miRNA:   3'- gCGCa---GCUU-CUGCUUC---UGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 154708 0.7 0.954829
Target:  5'- gGCGUCGA--GCGgcG-CGACGGaACGg -3'
miRNA:   3'- gCGCAGCUucUGCuuCuGCUGCC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.