miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 154681 0.72 0.893684
Target:  5'- aCGCGgCGGAGAUGAuGAUGugacuguuGCGGACGu -3'
miRNA:   3'- -GCGCaGCUUCUGCUuCUGC--------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 154564 0.66 0.996262
Target:  5'- uCGCcaUGggGgggcaggauaacgGCGAGGGCGACGG-CGg -3'
miRNA:   3'- -GCGcaGCuuC-------------UGCUUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 154402 0.71 0.919827
Target:  5'- -cCGUCGGAGGCGAucgggguccgaggcaAGAUGGCGG-CGu -3'
miRNA:   3'- gcGCAGCUUCUGCU---------------UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 153250 0.67 0.992536
Target:  5'- aGCGagccgGGAGACGAu--CGACGGAUGc -3'
miRNA:   3'- gCGCag---CUUCUGCUucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 153154 0.73 0.866312
Target:  5'- uCGCGgucCGGaaAGGCGAccuacgGGGCGGCGGGCa -3'
miRNA:   3'- -GCGCa--GCU--UCUGCU------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 153110 0.66 0.993471
Target:  5'- ---aUCcGGGACGAuucgguGGCGACGGGCGg -3'
miRNA:   3'- gcgcAGcUUCUGCUu-----CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 152796 0.76 0.738948
Target:  5'- cCGUcUCGGAGguccGCGgcGACGGCGGGCGg -3'
miRNA:   3'- -GCGcAGCUUC----UGCuuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 152702 0.7 0.938006
Target:  5'- uCGCGUCcccGGuCGggGuGCGGCGGGCa -3'
miRNA:   3'- -GCGCAGcu-UCuGCuuC-UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 152521 0.68 0.984491
Target:  5'- gGgGUCGggGucuCGgcGACGGCGuuccGACGa -3'
miRNA:   3'- gCgCAGCuuCu--GCuuCUGCUGC----CUGC- -5'
9131 5' -53.1 NC_002512.2 + 152436 0.68 0.978564
Target:  5'- aCGCG-CGu-GGCGAuuuCGACGGGCGc -3'
miRNA:   3'- -GCGCaGCuuCUGCUucuGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 151851 0.66 0.993471
Target:  5'- gCGUGUCGGAcacGCGAccGGAUGACucguGGGCGc -3'
miRNA:   3'- -GCGCAGCUUc--UGCU--UCUGCUG----CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 151091 0.7 0.938006
Target:  5'- cCGCGcCGGAGACGugcacgugucucGGGGCG-CGGugGc -3'
miRNA:   3'- -GCGCaGCUUCUGC------------UUCUGCuGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 150317 0.69 0.965201
Target:  5'- aGCGagacCGgcGGCGAGGACGcCGcGGCGg -3'
miRNA:   3'- gCGCa---GCuuCUGCUUCUGCuGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 150243 0.68 0.984491
Target:  5'- uCGCGuucUCGGAcGACGAGGGgGAC-GACGc -3'
miRNA:   3'- -GCGC---AGCUU-CUGCUUCUgCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 150085 0.75 0.766868
Target:  5'- cCGcCGUCGGGcGAUGGAGACGgACGaGACGg -3'
miRNA:   3'- -GC-GCAGCUU-CUGCUUCUGC-UGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 150037 0.7 0.942542
Target:  5'- gGaCGagGggGcCGggGACGACgGGGCGg -3'
miRNA:   3'- gC-GCagCuuCuGCuuCUGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 149845 0.72 0.899999
Target:  5'- gCGCGaCGAGGACGAcGACGAaagcaGcGACGc -3'
miRNA:   3'- -GCGCaGCUUCUGCUuCUGCUg----C-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 149837 0.76 0.710241
Target:  5'- uCGCGUCGcGGACGGAGAUGG-GGAUc -3'
miRNA:   3'- -GCGCAGCuUCUGCUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 149738 0.69 0.96195
Target:  5'- aGCGagGAGGACGAcgagggGGACGACcccgcgauGGACc -3'
miRNA:   3'- gCGCagCUUCUGCU------UCUGCUG--------CCUGc -5'
9131 5' -53.1 NC_002512.2 + 149443 0.67 0.991498
Target:  5'- gCGCGgggGGAGAgGAAGGgGACccgGGACGc -3'
miRNA:   3'- -GCGCag-CUUCUgCUUCUgCUG---CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.