miRNA display CGI


Results 61 - 80 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 108410 0.76 0.719883
Target:  5'- gGgGggGAGGACGggGACGGCGG-CGg -3'
miRNA:   3'- gCgCagCUUCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 9964 0.76 0.719883
Target:  5'- gCGCGUCGAcggAGACc--GACGACGaGACGa -3'
miRNA:   3'- -GCGCAGCU---UCUGcuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 83805 0.75 0.766868
Target:  5'- cCGCGUCGGGcGCGccGGCGGCGG-CGg -3'
miRNA:   3'- -GCGCAGCUUcUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 57200 0.75 0.775961
Target:  5'- aGCGgucgCGcAGGACGGAGACGagggccgagacGCGGGCGu -3'
miRNA:   3'- gCGCa---GC-UUCUGCUUCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 18675 0.75 0.775961
Target:  5'- -uCGUCGGAGAgGAagagcucguGGGCGGCGGGCa -3'
miRNA:   3'- gcGCAGCUUCUgCU---------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 62227 0.75 0.782254
Target:  5'- aCGCGUccugCGAgaggaccgacgagaGGACGAgcuGGGCGACGGGCa -3'
miRNA:   3'- -GCGCA----GCU--------------UCUGCU---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 56584 0.75 0.784933
Target:  5'- gGCGUUGGAGcCGAuGACGgcccuccaGCGGACGg -3'
miRNA:   3'- gCGCAGCUUCuGCUuCUGC--------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 121791 0.75 0.784933
Target:  5'- gGCGgggacgcCGAAGACGAcGACGACGacGACGa -3'
miRNA:   3'- gCGCa------GCUUCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 95297 0.74 0.802483
Target:  5'- -cCGUCGGcGGACGAGGcgccgaagcaGCGGCGGGCGa -3'
miRNA:   3'- gcGCAGCU-UCUGCUUC----------UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 133786 0.74 0.802483
Target:  5'- aCGaCGgCGgcGGCGggGACGACGGuCGc -3'
miRNA:   3'- -GC-GCaGCuuCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 46787 0.75 0.766868
Target:  5'- aCGC-UCGAAGACcuccgucuGAAGACGAcguCGGACGa -3'
miRNA:   3'- -GCGcAGCUUCUG--------CUUCUGCU---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 71550 0.75 0.766868
Target:  5'- gGUGUCGAAGACGGuccGGAgcGCGGACu -3'
miRNA:   3'- gCGCAGCUUCUGCU---UCUgcUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 70990 0.76 0.719883
Target:  5'- cCGCGacCGAGGACG-GGACGAaGGACGg -3'
miRNA:   3'- -GCGCa-GCUUCUGCuUCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 11537 0.76 0.729455
Target:  5'- aCGgGaUCGAccuGGACGAGGACGAggaGGACGa -3'
miRNA:   3'- -GCgC-AGCU---UCUGCUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 120780 0.76 0.729455
Target:  5'- gGCGgcCGucGGCGggGGCGGCgGGACGg -3'
miRNA:   3'- gCGCa-GCuuCUGCuuCUGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 101140 0.76 0.729455
Target:  5'- gCGCGUCGuAGACcuugagccaGAAGGCGGgGGACa -3'
miRNA:   3'- -GCGCAGCuUCUG---------CUUCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 132709 0.76 0.729455
Target:  5'- aCGUGUCGAccgucAGcACGAAGGCGAgcaGGACGc -3'
miRNA:   3'- -GCGCAGCU-----UC-UGCUUCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 152796 0.76 0.738948
Target:  5'- cCGUcUCGGAGguccGCGgcGACGGCGGGCGg -3'
miRNA:   3'- -GCGcAGCUUC----UGCuuCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 123559 0.75 0.748353
Target:  5'- gGaCGUCGAGGGgGAGaGCGACGGGCu -3'
miRNA:   3'- gC-GCAGCUUCUgCUUcUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 107956 0.75 0.758588
Target:  5'- uCGUGUCGAuggcguccagggccaGGGCGAAGGCGcagaaggucgggcuGCGGAUGg -3'
miRNA:   3'- -GCGCAGCU---------------UCUGCUUCUGC--------------UGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.