miRNA display CGI


Results 101 - 120 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 57925 0.73 0.843694
Target:  5'- aGCG-CGAGGACGGcgagcgggAGAUaGACGGGCGc -3'
miRNA:   3'- gCGCaGCUUCUGCU--------UCUG-CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 21235 0.73 0.851422
Target:  5'- cCGgGgCGGAGACGggGGCGGagaGGGCu -3'
miRNA:   3'- -GCgCaGCUUCUGCuuCUGCUg--CCUGc -5'
9131 5' -53.1 NC_002512.2 + 34910 0.73 0.851422
Target:  5'- uGCGcCGAgaggaGGACG-AGACGACGG-CGg -3'
miRNA:   3'- gCGCaGCU-----UCUGCuUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 24765 0.73 0.85747
Target:  5'- -cCGUCGGAGACGAAGACccgcucgggucCGGGCGc -3'
miRNA:   3'- gcGCAGCUUCUGCUUCUGcu---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 92004 0.73 0.858963
Target:  5'- cCGCGUCGccGGCGGcGGACucGCGGGCGu -3'
miRNA:   3'- -GCGCAGCuuCUGCU-UCUGc-UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 44129 0.74 0.827703
Target:  5'- gGCGU---AGACGAGGuCGACGGACc -3'
miRNA:   3'- gCGCAgcuUCUGCUUCuGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 30401 0.74 0.819453
Target:  5'- uCGCGgcccUGAcGGACGggGACG-CGGGCGu -3'
miRNA:   3'- -GCGCa---GCU-UCUGCuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 83805 0.75 0.766868
Target:  5'- cCGCGUCGGGcGCGccGGCGGCGG-CGg -3'
miRNA:   3'- -GCGCAGCUUcUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 57200 0.75 0.775961
Target:  5'- aGCGgucgCGcAGGACGGAGACGagggccgagacGCGGGCGu -3'
miRNA:   3'- gCGCa---GC-UUCUGCUUCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 18675 0.75 0.775961
Target:  5'- -uCGUCGGAGAgGAagagcucguGGGCGGCGGGCa -3'
miRNA:   3'- gcGCAGCUUCUgCU---------UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 62227 0.75 0.782254
Target:  5'- aCGCGUccugCGAgaggaccgacgagaGGACGAgcuGGGCGACGGGCa -3'
miRNA:   3'- -GCGCA----GCU--------------UCUGCU---UCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 56584 0.75 0.784933
Target:  5'- gGCGUUGGAGcCGAuGACGgcccuccaGCGGACGg -3'
miRNA:   3'- gCGCAGCUUCuGCUuCUGC--------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 121791 0.75 0.784933
Target:  5'- gGCGgggacgcCGAAGACGAcGACGACGacGACGa -3'
miRNA:   3'- gCGCa------GCUUCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 95297 0.74 0.802483
Target:  5'- -cCGUCGGcGGACGAGGcgccgaagcaGCGGCGGGCGa -3'
miRNA:   3'- gcGCAGCU-UCUGCUUC----------UGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 133786 0.74 0.802483
Target:  5'- aCGaCGgCGgcGGCGggGACGACGGuCGc -3'
miRNA:   3'- -GC-GCaGCuuCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 98085 0.74 0.802483
Target:  5'- aCGUGUcCGAGcggauGACGggGACGGCgcgGGACGa -3'
miRNA:   3'- -GCGCA-GCUU-----CUGCuuCUGCUG---CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 36728 0.74 0.805925
Target:  5'- uCGCGcCGAuccagacgccggccaGGACGAGGACGAcCGuGACGu -3'
miRNA:   3'- -GCGCaGCU---------------UCUGCUUCUGCU-GC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 101532 0.74 0.811044
Target:  5'- gGCGagGggGAaGGAGACGGCGGcgGCGg -3'
miRNA:   3'- gCGCagCuuCUgCUUCUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 11413 0.74 0.814426
Target:  5'- cCGCGggaCGAGGagaugaccgcgguccGCGggGACGccGCGGACGg -3'
miRNA:   3'- -GCGCa--GCUUC---------------UGCuuCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 24703 0.74 0.819453
Target:  5'- -uCGUCGAGGACGcGGGCGAgGGAg- -3'
miRNA:   3'- gcGCAGCUUCUGCuUCUGCUgCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.