Results 121 - 140 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 154681 | 0.72 | 0.893684 |
Target: 5'- aCGCGgCGGAGAUGAuGAUGugacuguuGCGGACGu -3' miRNA: 3'- -GCGCaGCUUCUGCUuCUGC--------UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 33261 | 0.72 | 0.899999 |
Target: 5'- gGCGUCGGccacccGGGCGAaccgggAGAUGguGCGGACGu -3' miRNA: 3'- gCGCAGCU------UCUGCU------UCUGC--UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 3472 | 0.74 | 0.835785 |
Target: 5'- cCGCGUcCGGAGACGcGGacGCGACGGGu- -3' miRNA: 3'- -GCGCA-GCUUCUGCuUC--UGCUGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 228720 | 0.74 | 0.835785 |
Target: 5'- uGCGaaGAAGaacuGCGGAGACGgacGCGGACGg -3' miRNA: 3'- gCGCagCUUC----UGCUUCUGC---UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 125141 | 0.74 | 0.835785 |
Target: 5'- aCGCGUgaaccgCGggGGCcccGggGGCgGGCGGACGg -3' miRNA: 3'- -GCGCA------GCuuCUG---CuuCUG-CUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 95297 | 0.74 | 0.802483 |
Target: 5'- -cCGUCGGcGGACGAGGcgccgaagcaGCGGCGGGCGa -3' miRNA: 3'- gcGCAGCU-UCUGCUUC----------UGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 133786 | 0.74 | 0.802483 |
Target: 5'- aCGaCGgCGgcGGCGggGACGACGGuCGc -3' miRNA: 3'- -GC-GCaGCuuCUGCuuCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 98085 | 0.74 | 0.802483 |
Target: 5'- aCGUGUcCGAGcggauGACGggGACGGCgcgGGACGa -3' miRNA: 3'- -GCGCA-GCUU-----CUGCuuCUGCUG---CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 36728 | 0.74 | 0.805925 |
Target: 5'- uCGCGcCGAuccagacgccggccaGGACGAGGACGAcCGuGACGu -3' miRNA: 3'- -GCGCaGCU---------------UCUGCUUCUGCU-GC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 101532 | 0.74 | 0.811044 |
Target: 5'- gGCGagGggGAaGGAGACGGCGGcgGCGg -3' miRNA: 3'- gCGCagCuuCUgCUUCUGCUGCC--UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 11413 | 0.74 | 0.814426 |
Target: 5'- cCGCGggaCGAGGagaugaccgcgguccGCGggGACGccGCGGACGg -3' miRNA: 3'- -GCGCa--GCUUC---------------UGCuuCUGC--UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 24703 | 0.74 | 0.819453 |
Target: 5'- -uCGUCGAGGACGcGGGCGAgGGAg- -3' miRNA: 3'- gcGCAGCUUCUGCuUCUGCUgCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 141011 | 0.72 | 0.899999 |
Target: 5'- gCGCGggGAGGACGggGACcACGGuCu -3' miRNA: 3'- -GCGCagCUUCUGCuuCUGcUGCCuGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 30401 | 0.74 | 0.819453 |
Target: 5'- uCGCGgcccUGAcGGACGggGACG-CGGGCGu -3' miRNA: 3'- -GCGCa---GCU-UCUGCuuCUGCuGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 44129 | 0.74 | 0.827703 |
Target: 5'- gGCGU---AGACGAGGuCGACGGACc -3' miRNA: 3'- gCGCAgcuUCUGCUUCuGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 27522 | 0.74 | 0.835785 |
Target: 5'- aGCGUCGGAGGCGGcucAGAccaauCGAgcCGGGCGc -3' miRNA: 3'- gCGCAGCUUCUGCU---UCU-----GCU--GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 122005 | 0.74 | 0.835785 |
Target: 5'- gGCGccCGGAGGggcCGGAGGCGGCGGAuCGg -3' miRNA: 3'- gCGCa-GCUUCU---GCUUCUGCUGCCU-GC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 43482 | 0.74 | 0.835785 |
Target: 5'- gGCGUgGAAGcCGAGGACG-CGGAg- -3' miRNA: 3'- gCGCAgCUUCuGCUUCUGCuGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 73149 | 0.74 | 0.835785 |
Target: 5'- uGCgGUUGAAGuACc-AGACGACGGACGa -3' miRNA: 3'- gCG-CAGCUUC-UGcuUCUGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 81185 | 0.74 | 0.835785 |
Target: 5'- gGCGcCGAcgauccGGGCGAAGGCGGC-GACGa -3' miRNA: 3'- gCGCaGCU------UCUGCUUCUGCUGcCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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