miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 57044 0.73 0.866312
Target:  5'- cCGCGUcCGAcGACcgGggGGCGcCGGGCGa -3'
miRNA:   3'- -GCGCA-GCUuCUG--CuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 52637 0.73 0.866312
Target:  5'- uGCGggaGGAGcUGGAGGCGACGGAgCGg -3'
miRNA:   3'- gCGCag-CUUCuGCUUCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 43482 0.74 0.835785
Target:  5'- gGCGUgGAAGcCGAGGACG-CGGAg- -3'
miRNA:   3'- gCGCAgCUUCuGCUUCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 122005 0.74 0.835785
Target:  5'- gGCGccCGGAGGggcCGGAGGCGGCGGAuCGg -3'
miRNA:   3'- gCGCa-GCUUCU---GCUUCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 27522 0.74 0.835785
Target:  5'- aGCGUCGGAGGCGGcucAGAccaauCGAgcCGGGCGc -3'
miRNA:   3'- gCGCAGCUUCUGCU---UCU-----GCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 44129 0.74 0.827703
Target:  5'- gGCGU---AGACGAGGuCGACGGACc -3'
miRNA:   3'- gCGCAgcuUCUGCUUCuGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 30401 0.74 0.819453
Target:  5'- uCGCGgcccUGAcGGACGggGACG-CGGGCGu -3'
miRNA:   3'- -GCGCa---GCU-UCUGCuuCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 24703 0.74 0.819453
Target:  5'- -uCGUCGAGGACGcGGGCGAgGGAg- -3'
miRNA:   3'- gcGCAGCUUCUGCuUCUGCUgCCUgc -5'
9131 5' -53.1 NC_002512.2 + 11413 0.74 0.814426
Target:  5'- cCGCGggaCGAGGagaugaccgcgguccGCGggGACGccGCGGACGg -3'
miRNA:   3'- -GCGCa--GCUUC---------------UGCuuCUGC--UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 101532 0.74 0.811044
Target:  5'- gGCGagGggGAaGGAGACGGCGGcgGCGg -3'
miRNA:   3'- gCGCagCuuCUgCUUCUGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 73149 0.74 0.835785
Target:  5'- uGCgGUUGAAGuACc-AGACGACGGACGa -3'
miRNA:   3'- gCG-CAGCUUC-UGcuUCUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 81185 0.74 0.835785
Target:  5'- gGCGcCGAcgauccGGGCGAAGGCGGC-GACGa -3'
miRNA:   3'- gCGCaGCU------UCUGCUUCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 92004 0.73 0.858963
Target:  5'- cCGCGUCGccGGCGGcGGACucGCGGGCGu -3'
miRNA:   3'- -GCGCAGCuuCUGCU-UCUGc-UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 24765 0.73 0.85747
Target:  5'- -cCGUCGGAGACGAAGACccgcucgggucCGGGCGc -3'
miRNA:   3'- gcGCAGCUUCUGCUUCUGcu---------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 34910 0.73 0.851422
Target:  5'- uGCGcCGAgaggaGGACG-AGACGACGG-CGg -3'
miRNA:   3'- gCGCaGCU-----UCUGCuUCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 21235 0.73 0.851422
Target:  5'- cCGgGgCGGAGACGggGGCGGagaGGGCu -3'
miRNA:   3'- -GCgCaGCUUCUGCuuCUGCUg--CCUGc -5'
9131 5' -53.1 NC_002512.2 + 57925 0.73 0.843694
Target:  5'- aGCG-CGAGGACGGcgagcgggAGAUaGACGGGCGc -3'
miRNA:   3'- gCGCaGCUUCUGCU--------UCUG-CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 3472 0.74 0.835785
Target:  5'- cCGCGUcCGGAGACGcGGacGCGACGGGu- -3'
miRNA:   3'- -GCGCA-GCUUCUGCuUC--UGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 228720 0.74 0.835785
Target:  5'- uGCGaaGAAGaacuGCGGAGACGgacGCGGACGg -3'
miRNA:   3'- gCGCagCUUC----UGCUUCUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 125141 0.74 0.835785
Target:  5'- aCGCGUgaaccgCGggGGCcccGggGGCgGGCGGACGg -3'
miRNA:   3'- -GCGCA------GCuuCUG---CuuCUG-CUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.