Results 161 - 180 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 21235 | 0.73 | 0.851422 |
Target: 5'- cCGgGgCGGAGACGggGGCGGagaGGGCu -3' miRNA: 3'- -GCgCaGCUUCUGCuuCUGCUg--CCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 57925 | 0.73 | 0.843694 |
Target: 5'- aGCG-CGAGGACGGcgagcgggAGAUaGACGGGCGc -3' miRNA: 3'- gCGCaGCUUCUGCU--------UCUG-CUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 3472 | 0.74 | 0.835785 |
Target: 5'- cCGCGUcCGGAGACGcGGacGCGACGGGu- -3' miRNA: 3'- -GCGCA-GCUUCUGCuUC--UGCUGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 228720 | 0.74 | 0.835785 |
Target: 5'- uGCGaaGAAGaacuGCGGAGACGgacGCGGACGg -3' miRNA: 3'- gCGCagCUUC----UGCUUCUGC---UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 125141 | 0.74 | 0.835785 |
Target: 5'- aCGCGUgaaccgCGggGGCcccGggGGCgGGCGGACGg -3' miRNA: 3'- -GCGCA------GCuuCUG---CuuCUG-CUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 81185 | 0.74 | 0.835785 |
Target: 5'- gGCGcCGAcgauccGGGCGAAGGCGGC-GACGa -3' miRNA: 3'- gCGCaGCU------UCUGCUUCUGCUGcCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 73149 | 0.74 | 0.835785 |
Target: 5'- uGCgGUUGAAGuACc-AGACGACGGACGa -3' miRNA: 3'- gCG-CAGCUUC-UGcuUCUGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 43482 | 0.74 | 0.835785 |
Target: 5'- gGCGUgGAAGcCGAGGACG-CGGAg- -3' miRNA: 3'- gCGCAgCUUCuGCUUCUGCuGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 122005 | 0.74 | 0.835785 |
Target: 5'- gGCGccCGGAGGggcCGGAGGCGGCGGAuCGg -3' miRNA: 3'- gCGCa-GCUUCU---GCUUCUGCUGCCU-GC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 34910 | 0.73 | 0.851422 |
Target: 5'- uGCGcCGAgaggaGGACG-AGACGACGG-CGg -3' miRNA: 3'- gCGCaGCU-----UCUGCuUCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 27522 | 0.74 | 0.835785 |
Target: 5'- aGCGUCGGAGGCGGcucAGAccaauCGAgcCGGGCGc -3' miRNA: 3'- gCGCAGCUUCUGCU---UCU-----GCU--GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 11071 | 0.72 | 0.887154 |
Target: 5'- cCGCG--GAGGGCG-AGACGgaGCGGACGg -3' miRNA: 3'- -GCGCagCUUCUGCuUCUGC--UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 121826 | 0.72 | 0.887154 |
Target: 5'- uCGcCGUCGGccGGACGggGGgGA-GGACGg -3' miRNA: 3'- -GC-GCAGCU--UCUGCuuCUgCUgCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 75029 | 0.72 | 0.887154 |
Target: 5'- aGgGcCGggGACGAGGggacgcACGACGGAgGg -3' miRNA: 3'- gCgCaGCuuCUGCUUC------UGCUGCCUgC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 44532 | 0.72 | 0.880412 |
Target: 5'- uCGCaGUCGAcGGCGAuGGCGGCGGcCa -3' miRNA: 3'- -GCG-CAGCUuCUGCUuCUGCUGCCuGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 31682 | 0.73 | 0.873464 |
Target: 5'- gGCGgaCGggGAgGAGGACG-CGGACc -3' miRNA: 3'- gCGCa-GCuuCUgCUUCUGCuGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 57044 | 0.73 | 0.866312 |
Target: 5'- cCGCGUcCGAcGACcgGggGGCGcCGGGCGa -3' miRNA: 3'- -GCGCA-GCUuCUG--CuuCUGCuGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 52637 | 0.73 | 0.866312 |
Target: 5'- uGCGggaGGAGcUGGAGGCGACGGAgCGg -3' miRNA: 3'- gCGCag-CUUCuGCUUCUGCUGCCU-GC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 92004 | 0.73 | 0.858963 |
Target: 5'- cCGCGUCGccGGCGGcGGACucGCGGGCGu -3' miRNA: 3'- -GCGCAGCuuCUGCU-UCUGc-UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 24765 | 0.73 | 0.85747 |
Target: 5'- -cCGUCGGAGACGAAGACccgcucgggucCGGGCGc -3' miRNA: 3'- gcGCAGCUUCUGCUUCUGcu---------GCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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