Results 41 - 60 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 119544 | 0.66 | 0.994309 |
Target: 5'- gGCuaggCGggGAgCGggGACcgGGCGGACc -3' miRNA: 3'- gCGca--GCuuCU-GCuuCUG--CUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 106562 | 0.66 | 0.995726 |
Target: 5'- aGCGgccCGAAGuc---GACGGCGGACa -3' miRNA: 3'- gCGCa--GCUUCugcuuCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 207511 | 0.66 | 0.996318 |
Target: 5'- cCGCGacCGAcGACGAGGACGG-GGcCGc -3' miRNA: 3'- -GCGCa-GCUuCUGCUUCUGCUgCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 119986 | 0.66 | 0.994309 |
Target: 5'- gCGCGaCGccGACGAGGGCaa-GGACa -3' miRNA: 3'- -GCGCaGCuuCUGCUUCUGcugCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 41294 | 0.66 | 0.996482 |
Target: 5'- gGCGUCcuugcggaagGAAGACGGAauuuucguuguccccGAacacgaccggaucCGACGGACGa -3' miRNA: 3'- gCGCAG----------CUUCUGCUU---------------CU-------------GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 110962 | 0.67 | 0.991498 |
Target: 5'- uCGCgGUCGAuGACGAgcAGcCGcCGGugGa -3' miRNA: 3'- -GCG-CAGCUuCUGCU--UCuGCuGCCugC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 157168 | 0.66 | 0.996318 |
Target: 5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3' miRNA: 3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 134280 | 0.67 | 0.991498 |
Target: 5'- uCGUGgUGAGGGaGAAGGCGGCGacGACGa -3' miRNA: 3'- -GCGCaGCUUCUgCUUCUGCUGC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 114330 | 0.67 | 0.992536 |
Target: 5'- aGCGUUcuuGACGcgcGCGGCGGGCGa -3' miRNA: 3'- gCGCAGcuuCUGCuucUGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 113263 | 0.66 | 0.993471 |
Target: 5'- aGCGagGggGGCGGccggcggggcAGccGCGGCGGGCc -3' miRNA: 3'- gCGCagCuuCUGCU----------UC--UGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 113053 | 0.66 | 0.993471 |
Target: 5'- cCGaUGUCGGAGccgcACGAGGGCcaGGCGGuCGa -3' miRNA: 3'- -GC-GCAGCUUC----UGCUUCUG--CUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 76095 | 0.66 | 0.994309 |
Target: 5'- gGCGaUCGGaagcugAGGCGggGGCGcCGGGg- -3' miRNA: 3'- gCGC-AGCU------UCUGCuuCUGCuGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 219681 | 0.66 | 0.994309 |
Target: 5'- gCGCGccgccCGAGGACGAGGAgGAgCGucGGCGc -3' miRNA: 3'- -GCGCa----GCUUCUGCUUCUgCU-GC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 168137 | 0.66 | 0.994309 |
Target: 5'- cCGCGgCGAggggcugggGGugGggGGCGGagaggGGACGc -3' miRNA: 3'- -GCGCaGCU---------UCugCuuCUGCUg----CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 133283 | 0.66 | 0.995059 |
Target: 5'- gGCGaUUGAGGGCGAggggaucaucgaAGACGcCGG-CGa -3' miRNA: 3'- gCGC-AGCUUCUGCU------------UCUGCuGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 229619 | 0.66 | 0.995059 |
Target: 5'- aGgGagCGggGAcCGAAGGgcaGGCGGGCGg -3' miRNA: 3'- gCgCa-GCuuCU-GCUUCUg--CUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 156518 | 0.66 | 0.995726 |
Target: 5'- gGCGgCGggGcGCGggGGucCGGCGG-CGg -3' miRNA: 3'- gCGCaGCuuC-UGCuuCU--GCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 217898 | 0.66 | 0.995726 |
Target: 5'- cCGCGUCGucGAgCGgcGGuacgaGACGGugGc -3' miRNA: 3'- -GCGCAGCuuCU-GCuuCUg----CUGCCugC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 195616 | 0.66 | 0.996318 |
Target: 5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3' miRNA: 3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 77086 | 0.66 | 0.996318 |
Target: 5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3' miRNA: 3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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