Results 61 - 80 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 219681 | 0.66 | 0.994309 |
Target: 5'- gCGCGccgccCGAGGACGAGGAgGAgCGucGGCGc -3' miRNA: 3'- -GCGCa----GCUUCUGCUUCUgCU-GC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 153110 | 0.66 | 0.993471 |
Target: 5'- ---aUCcGGGACGAuucgguGGCGACGGGCGg -3' miRNA: 3'- gcgcAGcUUCUGCUu-----CUGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 221589 | 0.66 | 0.996318 |
Target: 5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3' miRNA: 3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 38218 | 0.66 | 0.996318 |
Target: 5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3' miRNA: 3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 127273 | 0.66 | 0.996318 |
Target: 5'- gGCGUUcccccGGGCGuuGGCGGCGGcCGa -3' miRNA: 3'- gCGCAGcu---UCUGCuuCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 128034 | 0.66 | 0.995726 |
Target: 5'- gGCGUCGAAGAgcugcaCGGcccCGACGGucGCGg -3' miRNA: 3'- gCGCAGCUUCU------GCUucuGCUGCC--UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 130474 | 0.66 | 0.995726 |
Target: 5'- aGCGggggCGGAGACGAAGcCGcccCGGGa- -3' miRNA: 3'- gCGCa---GCUUCUGCUUCuGCu--GCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 103457 | 0.66 | 0.995059 |
Target: 5'- gCGCGggucCGAGGACGcGGcucgggucucgGCGGCGGccGCGg -3' miRNA: 3'- -GCGCa---GCUUCUGCuUC-----------UGCUGCC--UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 97079 | 0.66 | 0.994843 |
Target: 5'- uGCGgaucuucuuccggaaGGAcGGCGggGGCGACGGcaaGCGg -3' miRNA: 3'- gCGCag-------------CUU-CUGCuuCUGCUGCC---UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 157258 | 0.66 | 0.994309 |
Target: 5'- -cCGUCGAccGGCGAGGACGuguuCGuGGCGc -3' miRNA: 3'- gcGCAGCUu-CUGCUUCUGCu---GC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 228587 | 0.67 | 0.987687 |
Target: 5'- uCGUGUCGgcGGC--AGGCGcCGGACc -3' miRNA: 3'- -GCGCAGCuuCUGcuUCUGCuGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 227894 | 0.67 | 0.98826 |
Target: 5'- aCGCGggcgaguccgaggcCGGAGACGGAcgcgccgccuccGACGccgGCGGACGa -3' miRNA: 3'- -GCGCa-------------GCUUCUGCUU------------CUGC---UGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 228648 | 0.66 | 0.993471 |
Target: 5'- gGCGagGAcaagaaagagAGGCGggGAgGACGGGg- -3' miRNA: 3'- gCGCagCU----------UCUGCuuCUgCUGCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 180545 | 0.67 | 0.992536 |
Target: 5'- uCGuCGUCGAucGGCGcuuGCGGCGGGCu -3' miRNA: 3'- -GC-GCAGCUu-CUGCuucUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 134280 | 0.67 | 0.991498 |
Target: 5'- uCGUGgUGAGGGaGAAGGCGGCGacGACGa -3' miRNA: 3'- -GCGCaGCUUCUgCUUCUGCUGC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 110962 | 0.67 | 0.991498 |
Target: 5'- uCGCgGUCGAuGACGAgcAGcCGcCGGugGa -3' miRNA: 3'- -GCG-CAGCUuCUGCU--UCuGCuGCCugC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 100293 | 0.67 | 0.990348 |
Target: 5'- cCGCGUUGgcGGCGAAGAaaUGGCauaGGuCGg -3' miRNA: 3'- -GCGCAGCuuCUGCUUCU--GCUG---CCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 95808 | 0.67 | 0.990348 |
Target: 5'- gCGCGgaucCGAuAGACGggGAagGugGcGACGg -3' miRNA: 3'- -GCGCa---GCU-UCUGCuuCUg-CugC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 119769 | 0.67 | 0.989081 |
Target: 5'- aCGCGUCGcGGuCGAcGGCGG-GGACc -3' miRNA: 3'- -GCGCAGCuUCuGCUuCUGCUgCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 204824 | 0.67 | 0.989081 |
Target: 5'- gGCG-CGgcGGCuccguccggGAGGACGACGG-CGg -3' miRNA: 3'- gCGCaGCuuCUG---------CUUCUGCUGCCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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