Results 81 - 100 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 41640 | 0.66 | 0.993471 |
Target: 5'- aGCGaguuaUGGAGAcCGGAGACGcACGGuCGa -3' miRNA: 3'- gCGCa----GCUUCU-GCUUCUGC-UGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 210442 | 0.67 | 0.991498 |
Target: 5'- gGCGUCGggGACu-GGACccgUGGAUGc -3' miRNA: 3'- gCGCAGCuuCUGcuUCUGcu-GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 133012 | 0.67 | 0.991498 |
Target: 5'- cCGcCGaCGGAGAacugggaGAAGACGACGaGCGa -3' miRNA: 3'- -GC-GCaGCUUCUg------CUUCUGCUGCcUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 225952 | 0.67 | 0.990348 |
Target: 5'- aCGaCGaCGAcGACGAcGACGACGacGACGa -3' miRNA: 3'- -GC-GCaGCUuCUGCUuCUGCUGC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 111021 | 0.67 | 0.990348 |
Target: 5'- gGUGUCGcaguccAGACGggGACGGgaguCGGAg- -3' miRNA: 3'- gCGCAGCu-----UCUGCuuCUGCU----GCCUgc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 119769 | 0.67 | 0.989081 |
Target: 5'- aCGCGUCGcGGuCGAcGGCGG-GGACc -3' miRNA: 3'- -GCGCAGCuUCuGCUuCUGCUgCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 204824 | 0.67 | 0.989081 |
Target: 5'- gGCG-CGgcGGCuccguccggGAGGACGACGG-CGg -3' miRNA: 3'- gCGCaGCuuCUG---------CUUCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 157258 | 0.66 | 0.994309 |
Target: 5'- -cCGUCGAccGGCGAGGACGuguuCGuGGCGc -3' miRNA: 3'- gcGCAGCUu-CUGCUUCUGCu---GC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 97079 | 0.66 | 0.994843 |
Target: 5'- uGCGgaucuucuuccggaaGGAcGGCGggGGCGACGGcaaGCGg -3' miRNA: 3'- gCGCag-------------CUU-CUGCuuCUGCUGCC---UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 103457 | 0.66 | 0.995059 |
Target: 5'- gCGCGggucCGAGGACGcGGcucgggucucgGCGGCGGccGCGg -3' miRNA: 3'- -GCGCa---GCUUCUGCuUC-----------UGCUGCC--UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 113469 | 0.67 | 0.986159 |
Target: 5'- aGCGggagaCGGAGAaccaCGAGGGCGucaGGGCGa -3' miRNA: 3'- gCGCa----GCUUCU----GCUUCUGCug-CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 150243 | 0.68 | 0.984491 |
Target: 5'- uCGCGuucUCGGAcGACGAGGGgGAC-GACGc -3' miRNA: 3'- -GCGC---AGCUU-CUGCUUCUgCUGcCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 216030 | 0.68 | 0.984491 |
Target: 5'- aGCG-CGGuauaGGGCGcgcGAGuGCGACGGGCGu -3' miRNA: 3'- gCGCaGCU----UCUGC---UUC-UGCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 226205 | 0.68 | 0.982673 |
Target: 5'- -cCGUCGggGACGGgaGGACcucCGGACc -3' miRNA: 3'- gcGCAGCuuCUGCU--UCUGcu-GCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 155898 | 0.68 | 0.982673 |
Target: 5'- gGCG-CGggGACGAGucCGGCGccGACGc -3' miRNA: 3'- gCGCaGCuuCUGCUUcuGCUGC--CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 221589 | 0.66 | 0.996318 |
Target: 5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3' miRNA: 3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 38218 | 0.66 | 0.996318 |
Target: 5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3' miRNA: 3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 127273 | 0.66 | 0.996318 |
Target: 5'- gGCGUUcccccGGGCGuuGGCGGCGGcCGa -3' miRNA: 3'- gCGCAGcu---UCUGCuuCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 128034 | 0.66 | 0.995726 |
Target: 5'- gGCGUCGAAGAgcugcaCGGcccCGACGGucGCGg -3' miRNA: 3'- gCGCAGCUUCU------GCUucuGCUGCC--UGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 130474 | 0.66 | 0.995726 |
Target: 5'- aGCGggggCGGAGACGAAGcCGcccCGGGa- -3' miRNA: 3'- gCGCa---GCUUCUGCUUCuGCu--GCCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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