miRNA display CGI


Results 101 - 120 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 122305 0.68 0.984491
Target:  5'- uCGUGaccaaGAAGGCGAacguggcccugAGGCGGgGGACGg -3'
miRNA:   3'- -GCGCag---CUUCUGCU-----------UCUGCUgCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 144668 0.68 0.982673
Target:  5'- uCGCGguccgggCGA--GCGAGGACGACGacccGGCGa -3'
miRNA:   3'- -GCGCa------GCUucUGCUUCUGCUGC----CUGC- -5'
9131 5' -53.1 NC_002512.2 + 100969 0.68 0.982673
Target:  5'- uCGCuGUCGAGGGCGGgaaAGGCGACc-ACGu -3'
miRNA:   3'- -GCG-CAGCUUCUGCU---UCUGCUGccUGC- -5'
9131 5' -53.1 NC_002512.2 + 99486 0.68 0.981509
Target:  5'- cCGUGUCGAuccgcaaggcgugccAGACGggGuuGGCGGcCu -3'
miRNA:   3'- -GCGCAGCU---------------UCUGCuuCugCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 221394 0.68 0.9807
Target:  5'- gGCGgggCGcGGGCGGggAGGCGGCGGGu- -3'
miRNA:   3'- gCGCa--GCuUCUGCU--UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 225952 0.67 0.990348
Target:  5'- aCGaCGaCGAcGACGAcGACGACGacGACGa -3'
miRNA:   3'- -GC-GCaGCUuCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 133012 0.67 0.991498
Target:  5'- cCGcCGaCGGAGAacugggaGAAGACGACGaGCGa -3'
miRNA:   3'- -GC-GCaGCUUCUg------CUUCUGCUGCcUGC- -5'
9131 5' -53.1 NC_002512.2 + 221589 0.66 0.996318
Target:  5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3'
miRNA:   3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 38218 0.66 0.996318
Target:  5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3'
miRNA:   3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5'
9131 5' -53.1 NC_002512.2 + 127273 0.66 0.996318
Target:  5'- gGCGUUcccccGGGCGuuGGCGGCGGcCGa -3'
miRNA:   3'- gCGCAGcu---UCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 128034 0.66 0.995726
Target:  5'- gGCGUCGAAGAgcugcaCGGcccCGACGGucGCGg -3'
miRNA:   3'- gCGCAGCUUCU------GCUucuGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 130474 0.66 0.995726
Target:  5'- aGCGggggCGGAGACGAAGcCGcccCGGGa- -3'
miRNA:   3'- gCGCa---GCUUCUGCUUCuGCu--GCCUgc -5'
9131 5' -53.1 NC_002512.2 + 103457 0.66 0.995059
Target:  5'- gCGCGggucCGAGGACGcGGcucgggucucgGCGGCGGccGCGg -3'
miRNA:   3'- -GCGCa---GCUUCUGCuUC-----------UGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 97079 0.66 0.994843
Target:  5'- uGCGgaucuucuuccggaaGGAcGGCGggGGCGACGGcaaGCGg -3'
miRNA:   3'- gCGCag-------------CUU-CUGCuuCUGCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 157258 0.66 0.994309
Target:  5'- -cCGUCGAccGGCGAGGACGuguuCGuGGCGc -3'
miRNA:   3'- gcGCAGCUu-CUGCUUCUGCu---GC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 203106 0.66 0.994309
Target:  5'- aCGUcUCGAAGGCcAGGGCGuCGGcCGa -3'
miRNA:   3'- -GCGcAGCUUCUGcUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 113835 0.66 0.993985
Target:  5'- gGCGaUGAAGACGGAGAagugcuugggcaaGACGGcCa -3'
miRNA:   3'- gCGCaGCUUCUGCUUCUg------------CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 102839 0.66 0.993471
Target:  5'- cCGCGa-GGAGACGGGccaGACGGGCa -3'
miRNA:   3'- -GCGCagCUUCUGCUUcugCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 41640 0.66 0.993471
Target:  5'- aGCGaguuaUGGAGAcCGGAGACGcACGGuCGa -3'
miRNA:   3'- gCGCa----GCUUCU-GCUUCUGC-UGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 210442 0.67 0.991498
Target:  5'- gGCGUCGggGACu-GGACccgUGGAUGc -3'
miRNA:   3'- gCGCAGCuuCUGcuUCUGcu-GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.