miRNA display CGI


Results 121 - 140 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 82423 0.66 0.995059
Target:  5'- cCGCG-CGAAGACcagcaGCGACaGACGg -3'
miRNA:   3'- -GCGCaGCUUCUGcuuc-UGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 33439 0.66 0.995059
Target:  5'- uCGUGaUCGGAGaacuGCGAucuccGGuCGugGGACGa -3'
miRNA:   3'- -GCGC-AGCUUC----UGCU-----UCuGCugCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 111589 0.68 0.981509
Target:  5'- gCGCGcUCGGcccggaucuuccuccGGACGAGGGCGGCcaGCGa -3'
miRNA:   3'- -GCGC-AGCU---------------UCUGCUUCUGCUGccUGC- -5'
9131 5' -53.1 NC_002512.2 + 117798 0.68 0.982673
Target:  5'- aCGCGUgGGuccgccAGGCGAcgGGcucGCGGCGGACc -3'
miRNA:   3'- -GCGCAgCU------UCUGCU--UC---UGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 228057 0.68 0.982673
Target:  5'- cCGCGgaCGGcugcGGCGcggGAGACGACGGGCu -3'
miRNA:   3'- -GCGCa-GCUu---CUGC---UUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 199504 0.66 0.994309
Target:  5'- cCGCGagGAucAGGuCGAGGuCGuCGGGCGa -3'
miRNA:   3'- -GCGCagCU--UCU-GCUUCuGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 140086 0.66 0.993471
Target:  5'- cCGUGaCGAAGaACG-AGACGAC-GACGc -3'
miRNA:   3'- -GCGCaGCUUC-UGCuUCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 228648 0.66 0.993471
Target:  5'- gGCGagGAcaagaaagagAGGCGggGAgGACGGGg- -3'
miRNA:   3'- gCGCagCU----------UCUGCuuCUgCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 114330 0.67 0.992536
Target:  5'- aGCGUUcuuGACGcgcGCGGCGGGCGa -3'
miRNA:   3'- gCGCAGcuuCUGCuucUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 134280 0.67 0.991498
Target:  5'- uCGUGgUGAGGGaGAAGGCGGCGacGACGa -3'
miRNA:   3'- -GCGCaGCUUCUgCUUCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 144268 0.67 0.991498
Target:  5'- aGCGggCGAAGuCccaGAGGCGGCGGAgGc -3'
miRNA:   3'- gCGCa-GCUUCuGc--UUCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 100293 0.67 0.990348
Target:  5'- cCGCGUUGgcGGCGAAGAaaUGGCauaGGuCGg -3'
miRNA:   3'- -GCGCAGCuuCUGCUUCU--GCUG---CCuGC- -5'
9131 5' -53.1 NC_002512.2 + 199656 0.67 0.990348
Target:  5'- cCGCGgacggaGGAGGgGGAGAUGACGuACGu -3'
miRNA:   3'- -GCGCag----CUUCUgCUUCUGCUGCcUGC- -5'
9131 5' -53.1 NC_002512.2 + 119769 0.67 0.989081
Target:  5'- aCGCGUCGcGGuCGAcGGCGG-GGACc -3'
miRNA:   3'- -GCGCAGCuUCuGCUuCUGCUgCCUGc -5'
9131 5' -53.1 NC_002512.2 + 93551 0.67 0.989081
Target:  5'- cCGCGaCGggGACcugaugGGAGACaucGCGGugGa -3'
miRNA:   3'- -GCGCaGCuuCUG------CUUCUGc--UGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 227894 0.67 0.98826
Target:  5'- aCGCGggcgaguccgaggcCGGAGACGGAcgcgccgccuccGACGccgGCGGACGa -3'
miRNA:   3'- -GCGCa-------------GCUUCUGCUU------------CUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 114036 0.67 0.986159
Target:  5'- gGCG-CGGuGGACGuAGAgGGCGGGCc -3'
miRNA:   3'- gCGCaGCU-UCUGCuUCUgCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 201753 0.67 0.985999
Target:  5'- gGCGcCGAucccgggGGACGGgagGGACGagggugagagcGCGGACGg -3'
miRNA:   3'- gCGCaGCU-------UCUGCU---UCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 145531 0.68 0.984491
Target:  5'- gCGCGUCGGgccGGAgcaucccgcuCGAGGACG-CGG-CGa -3'
miRNA:   3'- -GCGCAGCU---UCU----------GCUUCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 188683 0.68 0.984491
Target:  5'- gGCGgucUCGggGACGAucACGGCGG-Cu -3'
miRNA:   3'- gCGC---AGCuuCUGCUucUGCUGCCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.