miRNA display CGI


Results 141 - 160 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 94433 0.7 0.958494
Target:  5'- cCGCGUCGAAcGCcuGGugGACGGccuCGg -3'
miRNA:   3'- -GCGCAGCUUcUGcuUCugCUGCCu--GC- -5'
9131 5' -53.1 NC_002512.2 + 223833 0.69 0.96195
Target:  5'- gCGCGUCGGAGGgGAAGGaggaGGCcgaGGAgGa -3'
miRNA:   3'- -GCGCAGCUUCUgCUUCUg---CUG---CCUgC- -5'
9131 5' -53.1 NC_002512.2 + 99933 0.68 0.981509
Target:  5'- uCGCGUCGcAGACGcAGAagaggucgaaggguuCGuCGGACa -3'
miRNA:   3'- -GCGCAGCuUCUGCuUCU---------------GCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 100969 0.68 0.982673
Target:  5'- uCGCuGUCGAGGGCGGgaaAGGCGACc-ACGu -3'
miRNA:   3'- -GCG-CAGCUUCUGCU---UCUGCUGccUGC- -5'
9131 5' -53.1 NC_002512.2 + 226205 0.68 0.982673
Target:  5'- -cCGUCGggGACGGgaGGACcucCGGACc -3'
miRNA:   3'- gcGCAGCuuCUGCU--UCUGcu-GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 188683 0.68 0.984491
Target:  5'- gGCGgucUCGggGACGAucACGGCGG-Cu -3'
miRNA:   3'- gCGC---AGCuuCUGCUucUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 150243 0.68 0.984491
Target:  5'- uCGCGuucUCGGAcGACGAGGGgGAC-GACGc -3'
miRNA:   3'- -GCGC---AGCUU-CUGCUUCUgCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 201753 0.67 0.985999
Target:  5'- gGCGcCGAucccgggGGACGGgagGGACGagggugagagcGCGGACGg -3'
miRNA:   3'- gCGCaGCU-------UCUGCU---UCUGC-----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 204914 0.67 0.987243
Target:  5'- --gGUCGGGuGACGggGACGGguucgacucccuccUGGACGu -3'
miRNA:   3'- gcgCAGCUU-CUGCuuCUGCU--------------GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 148253 0.67 0.987687
Target:  5'- aCGCGcCGAgccuGGACGu-GGCGACGGcCc -3'
miRNA:   3'- -GCGCaGCU----UCUGCuuCUGCUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 221394 0.68 0.9807
Target:  5'- gGCGgggCGcGGGCGGggAGGCGGCGGGu- -3'
miRNA:   3'- gCGCa--GCuUCUGCU--UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 221282 0.68 0.9807
Target:  5'- gCGCGUgGAGGGgGggGAggccgggguCGGCGGggaGCGg -3'
miRNA:   3'- -GCGCAgCUUCUgCuuCU---------GCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 112139 0.69 0.965201
Target:  5'- gGCG-CgGAAGACGAGGcgguCGACGG-CGa -3'
miRNA:   3'- gCGCaG-CUUCUGCUUCu---GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 36219 0.69 0.965201
Target:  5'- cCGacUCGGAGACGGucccgaGGACGACGG-CGa -3'
miRNA:   3'- -GCgcAGCUUCUGCU------UCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 229002 0.69 0.968252
Target:  5'- aGCG-CGGAGAgcgGGAGGCGagagaggagaGCGGACGg -3'
miRNA:   3'- gCGCaGCUUCUg--CUUCUGC----------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 184535 0.69 0.971107
Target:  5'- uCGCGgggucagcCGgcGGCGcGGGcCGGCGGACGg -3'
miRNA:   3'- -GCGCa-------GCuuCUGCuUCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 224157 0.69 0.973774
Target:  5'- aCGCGUgaGGcgGGGCGggGGCGcGCGGAg- -3'
miRNA:   3'- -GCGCAg-CU--UCUGCuuCUGC-UGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 89619 0.68 0.976257
Target:  5'- aCGUGggcCGGacugcGGACGAAGcCGACgGGGCGg -3'
miRNA:   3'- -GCGCa--GCU-----UCUGCUUCuGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 143575 0.68 0.978564
Target:  5'- gGCGggccggCGGAGAgGGAGGCGcccuugcguGCGGGCc -3'
miRNA:   3'- gCGCa-----GCUUCUgCUUCUGC---------UGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 219836 0.68 0.978564
Target:  5'- uCG-GUCGggGGguccggccCGggGGCGgaucGCGGACGg -3'
miRNA:   3'- -GCgCAGCuuCU--------GCuuCUGC----UGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.