miRNA display CGI


Results 1 - 20 of 575 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9133 3' -68.8 NC_002512.2 + 226849 0.65 0.527567
Target:  5'- gCCG-GGUGGCGaacgaGCGgaaagagggagaaGCGGCCGCCgCGa -3'
miRNA:   3'- -GGCgCCGCCGC-----CGC-------------CGCUGGCGGgGC- -5'
9133 3' -68.8 NC_002512.2 + 16896 0.65 0.525832
Target:  5'- cCCGaCGGCcGCGGCGaCGAugaggucgcagaucUCGaCCCCGg -3'
miRNA:   3'- -GGC-GCCGcCGCCGCcGCU--------------GGC-GGGGC- -5'
9133 3' -68.8 NC_002512.2 + 87852 0.66 0.523234
Target:  5'- cUCGCGGCgggucgccggcccccGGCcGCGGaagaGACgGCCgCCGg -3'
miRNA:   3'- -GGCGCCG---------------CCGcCGCCg---CUGgCGG-GGC- -5'
9133 3' -68.8 NC_002512.2 + 106779 0.66 0.523234
Target:  5'- cCCGCGGCacuggucggggucggGGUcgacgucgggaGGgGGCGagGCCGCCgCGa -3'
miRNA:   3'- -GGCGCCG---------------CCG-----------CCgCCGC--UGGCGGgGC- -5'
9133 3' -68.8 NC_002512.2 + 80817 0.66 0.519778
Target:  5'- gCGCGccuCGGCGuCGGCGGagggGCCCCGu -3'
miRNA:   3'- gGCGCc--GCCGCcGCCGCUgg--CGGGGC- -5'
9133 3' -68.8 NC_002512.2 + 97842 0.66 0.519778
Target:  5'- gCGCGGgGGaagcggaGGCGaCGACCGagacggaCCCGc -3'
miRNA:   3'- gGCGCCgCCg------CCGCcGCUGGCg------GGGC- -5'
9133 3' -68.8 NC_002512.2 + 9325 0.66 0.519778
Target:  5'- -gGCGGCGcacggccagguaGaCGGCGGUGA-CGCCCUc -3'
miRNA:   3'- ggCGCCGC------------C-GCCGCCGCUgGCGGGGc -5'
9133 3' -68.8 NC_002512.2 + 112893 0.66 0.519778
Target:  5'- cCUGCGuGCGGCcGuCGGC--CCGCCCgGa -3'
miRNA:   3'- -GGCGC-CGCCGcC-GCCGcuGGCGGGgC- -5'
9133 3' -68.8 NC_002512.2 + 32728 0.66 0.519778
Target:  5'- gCGCGGguggaagaCGGCcGUGGCGACCuuguaGCCCa- -3'
miRNA:   3'- gGCGCC--------GCCGcCGCCGCUGG-----CGGGgc -5'
9133 3' -68.8 NC_002512.2 + 33191 0.66 0.519778
Target:  5'- gUCG-GGCuGGCGGaCGGUGccGCuCGUCCCGc -3'
miRNA:   3'- -GGCgCCG-CCGCC-GCCGC--UG-GCGGGGC- -5'
9133 3' -68.8 NC_002512.2 + 113765 0.66 0.519778
Target:  5'- aCGCGGCGGCa-CaGCGAUUGCaCUCGu -3'
miRNA:   3'- gGCGCCGCCGccGcCGCUGGCG-GGGC- -5'
9133 3' -68.8 NC_002512.2 + 18377 0.66 0.519778
Target:  5'- aUCGCGGCcgauGUGGCGGC-ACaggaGCUCCu -3'
miRNA:   3'- -GGCGCCGc---CGCCGCCGcUGg---CGGGGc -5'
9133 3' -68.8 NC_002512.2 + 149228 0.66 0.519778
Target:  5'- gCCGCGGgacCGaCGGaccCGGCG-CCGCCgCCGc -3'
miRNA:   3'- -GGCGCC---GCcGCC---GCCGCuGGCGG-GGC- -5'
9133 3' -68.8 NC_002512.2 + 112380 0.66 0.519778
Target:  5'- aCGaUGGCGGUGGCGGCcuugaACCaGCCgaCGu -3'
miRNA:   3'- gGC-GCCGCCGCCGCCGc----UGG-CGGg-GC- -5'
9133 3' -68.8 NC_002512.2 + 158602 0.66 0.519778
Target:  5'- aCGUGGUGcGCucccggguccuGGCGGCccugGACgGCUCCGa -3'
miRNA:   3'- gGCGCCGC-CG-----------CCGCCG----CUGgCGGGGC- -5'
9133 3' -68.8 NC_002512.2 + 150706 0.66 0.518915
Target:  5'- aCCGuUGGCucuCGGCGGcCGACCGUuggacuuCCCGu -3'
miRNA:   3'- -GGC-GCCGcc-GCCGCC-GCUGGCG-------GGGC- -5'
9133 3' -68.8 NC_002512.2 + 18628 0.66 0.518915
Target:  5'- -aGCGGUcgaacauGGCGuCGaCGGCCGCCUCGa -3'
miRNA:   3'- ggCGCCG-------CCGCcGCcGCUGGCGGGGC- -5'
9133 3' -68.8 NC_002512.2 + 217723 0.66 0.51461
Target:  5'- uCCGCuucaGgGGCGGCaGgGACCGCgacuugaagaagaacCCCGg -3'
miRNA:   3'- -GGCGc---CgCCGCCGcCgCUGGCG---------------GGGC- -5'
9133 3' -68.8 NC_002512.2 + 116468 0.66 0.51461
Target:  5'- aCGgGGCGGUgaucccGGCGGCccacgcgcacuaccgGACCcugcugGCCCUGg -3'
miRNA:   3'- gGCgCCGCCG------CCGCCG---------------CUGG------CGGGGC- -5'
9133 3' -68.8 NC_002512.2 + 195553 0.66 0.511177
Target:  5'- -aGCGGCcGUGuGUGGUGGCC-CCUCGa -3'
miRNA:   3'- ggCGCCGcCGC-CGCCGCUGGcGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.