miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9133 5' -56.9 NC_002512.2 + 36846 0.66 0.949517
Target:  5'- -cUGGGGgGACacGUCGGGCCGaUAGGc -3'
miRNA:   3'- cuGCUCCgCUGc-UAGCUCGGC-AUCCa -5'
9133 5' -56.9 NC_002512.2 + 87093 0.66 0.949517
Target:  5'- cGCGGGGCGACGu----GCUGgggAGGUg -3'
miRNA:   3'- cUGCUCCGCUGCuagcuCGGCa--UCCA- -5'
9133 5' -56.9 NC_002512.2 + 205712 0.66 0.949517
Target:  5'- cGGCGAcaGGCGGCGGcacaagucggggUCGGGggGUAGGUa -3'
miRNA:   3'- -CUGCU--CCGCUGCU------------AGCUCggCAUCCA- -5'
9133 5' -56.9 NC_002512.2 + 158852 0.66 0.949517
Target:  5'- aGCGGGGgGACGucgucGUCGAccgGCCGgcGGc -3'
miRNA:   3'- cUGCUCCgCUGC-----UAGCU---CGGCauCCa -5'
9133 5' -56.9 NC_002512.2 + 177014 0.66 0.949517
Target:  5'- gGGCGucaGGGCcgccuGCGcgucccgccaGUUGAGCCGUAGGUg -3'
miRNA:   3'- -CUGC---UCCGc----UGC----------UAGCUCGGCAUCCA- -5'
9133 5' -56.9 NC_002512.2 + 101443 0.66 0.945374
Target:  5'- cGGCGcGGCGACGccgaGAGCgGggGGGUg -3'
miRNA:   3'- -CUGCuCCGCUGCuag-CUCGgCa-UCCA- -5'
9133 5' -56.9 NC_002512.2 + 43019 0.66 0.945374
Target:  5'- -cCGAGGCGuugggcaGGUCGAGgCGcAGGUc -3'
miRNA:   3'- cuGCUCCGCug-----CUAGCUCgGCaUCCA- -5'
9133 5' -56.9 NC_002512.2 + 36752 0.66 0.945374
Target:  5'- gGACGAGGaCGACcgugacGUCGGGCCGg---- -3'
miRNA:   3'- -CUGCUCC-GCUGc-----UAGCUCGGCaucca -5'
9133 5' -56.9 NC_002512.2 + 20297 0.66 0.945374
Target:  5'- gGACGuGGCGGUGAcCGuGCCGgacgAGGa -3'
miRNA:   3'- -CUGCuCCGCUGCUaGCuCGGCa---UCCa -5'
9133 5' -56.9 NC_002512.2 + 35473 0.66 0.945374
Target:  5'- uGGCGAcGUguauGACGGUCGuGCCGUGGcGg -3'
miRNA:   3'- -CUGCUcCG----CUGCUAGCuCGGCAUC-Ca -5'
9133 5' -56.9 NC_002512.2 + 127734 0.66 0.945374
Target:  5'- cGACGAcccaGCG-CGGUCGcGGCCGUAGa- -3'
miRNA:   3'- -CUGCUc---CGCuGCUAGC-UCGGCAUCca -5'
9133 5' -56.9 NC_002512.2 + 132238 0.66 0.945374
Target:  5'- uGCGAGaCGGCGAgguucUCGAGCUgcgucaggcgGUAGGUc -3'
miRNA:   3'- cUGCUCcGCUGCU-----AGCUCGG----------CAUCCA- -5'
9133 5' -56.9 NC_002512.2 + 226775 0.66 0.945374
Target:  5'- gGGCGAGGaCGucuCGggCGAcGCCGUGGu- -3'
miRNA:   3'- -CUGCUCC-GCu--GCuaGCU-CGGCAUCca -5'
9133 5' -56.9 NC_002512.2 + 108418 0.66 0.941014
Target:  5'- gGACGGGGaCGGCGG-CGGGCgCG-GGGc -3'
miRNA:   3'- -CUGCUCC-GCUGCUaGCUCG-GCaUCCa -5'
9133 5' -56.9 NC_002512.2 + 210498 0.66 0.941014
Target:  5'- cGCGAGGCGAgggccCGAcgCGAGCgCG-AGGc -3'
miRNA:   3'- cUGCUCCGCU-----GCUa-GCUCG-GCaUCCa -5'
9133 5' -56.9 NC_002512.2 + 215150 0.66 0.941014
Target:  5'- gGGgGAGGCGACGAgcacCuGGCCGUccugcugcucGGGg -3'
miRNA:   3'- -CUgCUCCGCUGCUa---GcUCGGCA----------UCCa -5'
9133 5' -56.9 NC_002512.2 + 81281 0.66 0.941014
Target:  5'- cGGCaGGGgGGCGGUcCGGGCCugcgggGUGGGUu -3'
miRNA:   3'- -CUGcUCCgCUGCUA-GCUCGG------CAUCCA- -5'
9133 5' -56.9 NC_002512.2 + 91912 0.66 0.941014
Target:  5'- -cUGGGGCGGCGG-CGcGCCGUcGGc -3'
miRNA:   3'- cuGCUCCGCUGCUaGCuCGGCAuCCa -5'
9133 5' -56.9 NC_002512.2 + 56389 0.66 0.941014
Target:  5'- cGGCGGGGCGA-GGUCGAGac--AGGUc -3'
miRNA:   3'- -CUGCUCCGCUgCUAGCUCggcaUCCA- -5'
9133 5' -56.9 NC_002512.2 + 228207 0.66 0.936436
Target:  5'- -uCGAGGCcGCGGUCGAgGCCGggcgAGa- -3'
miRNA:   3'- cuGCUCCGcUGCUAGCU-CGGCa---UCca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.