miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 3' -65.1 NC_002512.2 + 2941 0.66 0.655056
Target:  5'- gCCUCCCgCGcGGCCUUggcgagcuugaGCGCCUUCUCGc -3'
miRNA:   3'- -GGAGGGgGC-UUGGGG-----------CGCGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 2983 0.66 0.608652
Target:  5'- gCCUCCUUgGc-CCCCGCgugGCCCggUCCCGg -3'
miRNA:   3'- -GGAGGGGgCuuGGGGCG---CGGG--AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 3159 0.71 0.370417
Target:  5'- -gUCCCgCCGucguCgCCCGCGgCCUCCCGu -3'
miRNA:   3'- ggAGGG-GGCuu--G-GGGCGCgGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 3296 0.84 0.050159
Target:  5'- uCCUCCCCCGGGCC--GCGCCCUCCUg -3'
miRNA:   3'- -GGAGGGGGCUUGGggCGCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 3412 0.68 0.491197
Target:  5'- --gCgCCCGGGCCCCG-GCcuCCUCCCGc -3'
miRNA:   3'- ggaGgGGGCUUGGGGCgCG--GGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 3518 0.77 0.151563
Target:  5'- cCCUCCaCCCGAGCCCgCgGgGCCCgaagCCCGg -3'
miRNA:   3'- -GGAGG-GGGCUUGGG-G-CgCGGGa---GGGU- -5'
9134 3' -65.1 NC_002512.2 + 3651 0.69 0.447923
Target:  5'- uCCUCCUCCGGcCCCCucgcgGCcgacgguccggagGUCCUCCCGu -3'
miRNA:   3'- -GGAGGGGGCUuGGGG-----CG-------------CGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 4349 0.69 0.473985
Target:  5'- uCgUCCUCCGcGCCUCcCGCCgUCCCGu -3'
miRNA:   3'- -GgAGGGGGCuUGGGGcGCGGgAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 4479 0.73 0.265779
Target:  5'- aCCcgaCCCCGAcCCCgGCGCCgUCCCc -3'
miRNA:   3'- -GGag-GGGGCUuGGGgCGCGGgAGGGu -5'
9134 3' -65.1 NC_002512.2 + 5277 0.66 0.607725
Target:  5'- cCCgagCCCggucggcaCCGcgUCCCGCGCCCUgacguaaCCCGg -3'
miRNA:   3'- -GGa--GGG--------GGCuuGGGGCGCGGGA-------GGGU- -5'
9134 3' -65.1 NC_002512.2 + 5356 0.66 0.608652
Target:  5'- -gUCCCCCGGGaCCUGUGgUCCUCCg- -3'
miRNA:   3'- ggAGGGGGCUUgGGGCGC-GGGAGGgu -5'
9134 3' -65.1 NC_002512.2 + 5725 0.67 0.590151
Target:  5'- uCCgcgcgCCCCCGccccGCCUcaCGCGUccgCCUCCCGg -3'
miRNA:   3'- -GGa----GGGGGCu---UGGG--GCGCG---GGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 5963 0.72 0.29567
Target:  5'- aCCUCCCCgucCGGcucgACCucucgCCGCGCCgCUCCCGc -3'
miRNA:   3'- -GGAGGGG---GCU----UGG-----GGCGCGG-GAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 6151 0.66 0.664316
Target:  5'- aCCUCCacgaCGGucuCCCgGuCGUCCUCCCc -3'
miRNA:   3'- -GGAGGgg--GCUu--GGGgC-GCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 7197 0.67 0.550767
Target:  5'- uCCUCCCCgugccgggcgcaguCGAACUCgagGCGCCCcucggCCCGg -3'
miRNA:   3'- -GGAGGGG--------------GCUUGGGg--CGCGGGa----GGGU- -5'
9134 3' -65.1 NC_002512.2 + 7515 0.7 0.432348
Target:  5'- gCCagagCCCgCCGGggaaggcgGCCCCGUGCCgCUCCUc -3'
miRNA:   3'- -GGa---GGG-GGCU--------UGGGGCGCGG-GAGGGu -5'
9134 3' -65.1 NC_002512.2 + 8495 0.73 0.28341
Target:  5'- gCCUCCCCg----CCCGCGCCCcgCCCGa -3'
miRNA:   3'- -GGAGGGGgcuugGGGCGCGGGa-GGGU- -5'
9134 3' -65.1 NC_002512.2 + 8608 0.79 0.117068
Target:  5'- gCCUCCCCCcccuccacgcGCCCCGCGUCC-CCCGa -3'
miRNA:   3'- -GGAGGGGGcu--------UGGGGCGCGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 9564 0.7 0.392159
Target:  5'- uCCggcCCCCCGGAgcccggcCCCCG-GCCC-CCCGg -3'
miRNA:   3'- -GGa--GGGGGCUU-------GGGGCgCGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 9675 0.69 0.468881
Target:  5'- uCgUCCCCCGGgccgccgucggGCCCCgGCGgggguucgcggaaccUCCUCCCGa -3'
miRNA:   3'- -GgAGGGGGCU-----------UGGGG-CGC---------------GGGAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.