miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 5' -52.3 NC_002512.2 + 4871 0.66 0.995594
Target:  5'- gCCgcgugCGGCGCcggcuggaggagcgGCGacgGGAAGAGGgcGCCg -3'
miRNA:   3'- -GGa----GUCGUG--------------UGCg--CCUUCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 72896 0.66 0.995392
Target:  5'- uCCgCAGCAUcCG-GGGAGAGGAUuggaugaguuaccugGCCg -3'
miRNA:   3'- -GGaGUCGUGuGCgCCUUCUUCUA---------------CGG- -5'
9134 5' -52.3 NC_002512.2 + 223830 0.66 0.995112
Target:  5'- --aCGGCGCGucggaGgGGAAGGAGGagGCCg -3'
miRNA:   3'- ggaGUCGUGUg----CgCCUUCUUCUa-CGG- -5'
9134 5' -52.3 NC_002512.2 + 217432 0.66 0.995112
Target:  5'- cCCgUCAGCAC-CGUGGccG-AGAaGCCc -3'
miRNA:   3'- -GG-AGUCGUGuGCGCCuuCuUCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 5450 0.66 0.995112
Target:  5'- gCgUCGGCGCGuagaGCGGAAGggG--GCa -3'
miRNA:   3'- -GgAGUCGUGUg---CGCCUUCuuCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 23845 0.66 0.995112
Target:  5'- aCCUgAucCACACGaCGGAAGggGAcgUGUa -3'
miRNA:   3'- -GGAgUc-GUGUGC-GCCUUCuuCU--ACGg -5'
9134 5' -52.3 NC_002512.2 + 22175 0.66 0.995112
Target:  5'- aCUCGGCGCugGCGau-GgcGAUGaCg -3'
miRNA:   3'- gGAGUCGUGugCGCcuuCuuCUACgG- -5'
9134 5' -52.3 NC_002512.2 + 50095 0.66 0.995112
Target:  5'- aCC-C-GCACACGaCGGAccggucgaaGGAGGccGCCg -3'
miRNA:   3'- -GGaGuCGUGUGC-GCCU---------UCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 121828 0.66 0.995112
Target:  5'- gCCgUCGGcCGgACGgGGggGAGGAcgGCg -3'
miRNA:   3'- -GG-AGUC-GUgUGCgCCuuCUUCUa-CGg -5'
9134 5' -52.3 NC_002512.2 + 81691 0.66 0.995112
Target:  5'- cCCgCAGCuCG-GCGGccGGGAGGGUGUCg -3'
miRNA:   3'- -GGaGUCGuGUgCGCC--UUCUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 63670 0.66 0.994665
Target:  5'- cCC-CAcGCGCGCGCGGcccuccucgccgcccAAGAAG--GCCa -3'
miRNA:   3'- -GGaGU-CGUGUGCGCC---------------UUCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 131813 0.66 0.99435
Target:  5'- gCUCGG-ACACGUcccGGGAGAcGA-GCCg -3'
miRNA:   3'- gGAGUCgUGUGCG---CCUUCUuCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 57190 0.66 0.99435
Target:  5'- aCCUCgcGGCAgcgguCGCGCaGGAcGGAGAcgaggGCCg -3'
miRNA:   3'- -GGAG--UCGU-----GUGCG-CCUuCUUCUa----CGG- -5'
9134 5' -52.3 NC_002512.2 + 82535 0.66 0.99435
Target:  5'- -gUCGGC-CGCGCucuguccgGGAcGAAGGUGCg -3'
miRNA:   3'- ggAGUCGuGUGCG--------CCUuCUUCUACGg -5'
9134 5' -52.3 NC_002512.2 + 14810 0.66 0.99435
Target:  5'- uCCUCGGUcccGCcgACGCGGuAGAcGccGCCg -3'
miRNA:   3'- -GGAGUCG---UG--UGCGCCuUCUuCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 87801 0.66 0.994269
Target:  5'- uCCUguGUgucgucgaggcggGCGgGCGGucGGAGggGCCg -3'
miRNA:   3'- -GGAguCG-------------UGUgCGCCuuCUUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 118275 0.66 0.993495
Target:  5'- gCCUC-GCugGcCGCccucguccGGAGGAAGAUccggGCCg -3'
miRNA:   3'- -GGAGuCGugU-GCG--------CCUUCUUCUA----CGG- -5'
9134 5' -52.3 NC_002512.2 + 47714 0.66 0.993495
Target:  5'- uCCUgcGCGCcgccuCGCGGGAGGAGG-GCUc -3'
miRNA:   3'- -GGAguCGUGu----GCGCCUUCUUCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 100971 0.66 0.993495
Target:  5'- uCCUCGGUcaGCuccCGCGGcGGGcGGAUcGCCa -3'
miRNA:   3'- -GGAGUCG--UGu--GCGCCuUCU-UCUA-CGG- -5'
9134 5' -52.3 NC_002512.2 + 111287 0.66 0.993495
Target:  5'- -gUCGGcCGC-CGCGGGgAGAGGGccGCCg -3'
miRNA:   3'- ggAGUC-GUGuGCGCCU-UCUUCUa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.