miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9137 3' -57.8 NC_002512.2 + 37500 0.66 0.939448
Target:  5'- uCCGCaUCggaUUGCGGAUCgGUUA-GAGCu -3'
miRNA:   3'- -GGCG-AG---AGCGCCUAGgCGAUgCUCGc -5'
9137 3' -57.8 NC_002512.2 + 132736 0.66 0.939448
Target:  5'- gCCGCaggCgcagCGCGGcgucGUcCCGCagGCGGGCGa -3'
miRNA:   3'- -GGCGa--Ga---GCGCC----UA-GGCGa-UGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 79740 0.66 0.939448
Target:  5'- aCGggCUgGCGGAcgCCGacACGAGCGg -3'
miRNA:   3'- gGCgaGAgCGCCUa-GGCgaUGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 108113 0.66 0.939448
Target:  5'- cCCGC-CUCgGCGG-UCCGCggucccgagagGCGcGCGa -3'
miRNA:   3'- -GGCGaGAG-CGCCuAGGCGa----------UGCuCGC- -5'
9137 3' -57.8 NC_002512.2 + 217704 0.66 0.939448
Target:  5'- cCCGCcggCgUCGaCGaGGUCCGCUucAgGGGCGg -3'
miRNA:   3'- -GGCGa--G-AGC-GC-CUAGGCGA--UgCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 135631 0.66 0.939448
Target:  5'- -aGUUCUCGgGGGUCCGgguCGccGGCGg -3'
miRNA:   3'- ggCGAGAGCgCCUAGGCgauGC--UCGC- -5'
9137 3' -57.8 NC_002512.2 + 101829 0.66 0.939448
Target:  5'- gCCGCgacgaucCUC-CGGAucUCCGCcagaggcaGCGAGCGa -3'
miRNA:   3'- -GGCGa------GAGcGCCU--AGGCGa-------UGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 151420 0.66 0.939448
Target:  5'- uCCGCcCUCGCGG-UCCG--GCcGGCGc -3'
miRNA:   3'- -GGCGaGAGCGCCuAGGCgaUGcUCGC- -5'
9137 3' -57.8 NC_002512.2 + 213155 0.66 0.934865
Target:  5'- cCCGCUCaUgGCGGGUCaGCUcuGCGuggucGGCa -3'
miRNA:   3'- -GGCGAG-AgCGCCUAGgCGA--UGC-----UCGc -5'
9137 3' -57.8 NC_002512.2 + 72983 0.66 0.934865
Target:  5'- aCgGC-CUUGgGGAUCUGCggccaGCGGGUGu -3'
miRNA:   3'- -GgCGaGAGCgCCUAGGCGa----UGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 6375 0.66 0.934865
Target:  5'- gCCGUUCUccgcCGUGGucgUCGCgACGGGCa -3'
miRNA:   3'- -GGCGAGA----GCGCCua-GGCGaUGCUCGc -5'
9137 3' -57.8 NC_002512.2 + 11393 0.66 0.934865
Target:  5'- aCgGCUCggaCGCGGAcgacCCGCgggACGAGg- -3'
miRNA:   3'- -GgCGAGa--GCGCCUa---GGCGa--UGCUCgc -5'
9137 3' -57.8 NC_002512.2 + 128799 0.66 0.934865
Target:  5'- -gGgUCUCcgGCGuGGUCCGCggGCGGGCc -3'
miRNA:   3'- ggCgAGAG--CGC-CUAGGCGa-UGCUCGc -5'
9137 3' -57.8 NC_002512.2 + 3433 0.66 0.934865
Target:  5'- cCCGC-CUCGCGGGgcuggUCgGUgACG-GCGa -3'
miRNA:   3'- -GGCGaGAGCGCCU-----AGgCGaUGCuCGC- -5'
9137 3' -57.8 NC_002512.2 + 7364 0.66 0.934865
Target:  5'- aCCGCgacgGCGG--CCGCgGCGGGCGg -3'
miRNA:   3'- -GGCGagagCGCCuaGGCGaUGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 104978 0.66 0.933449
Target:  5'- uCCGC-CUCGagguaGGGgagguagcccggguUCCGC-ACGGGCGc -3'
miRNA:   3'- -GGCGaGAGCg----CCU--------------AGGCGaUGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 21736 0.66 0.930069
Target:  5'- aCCGgaCcgCGCGGA-CCGCUcCGAucuGCGg -3'
miRNA:   3'- -GGCgaGa-GCGCCUaGGCGAuGCU---CGC- -5'
9137 3' -57.8 NC_002512.2 + 153343 0.66 0.930069
Target:  5'- gCCGgUCcgggUCgGCGGGUcCCGCUGggcUGGGCGg -3'
miRNA:   3'- -GGCgAG----AG-CGCCUA-GGCGAU---GCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 127401 0.66 0.925058
Target:  5'- gCCGC-CU-GCGGGaCCGCcaccgcgACGGGCGc -3'
miRNA:   3'- -GGCGaGAgCGCCUaGGCGa------UGCUCGC- -5'
9137 3' -57.8 NC_002512.2 + 94030 0.66 0.925058
Target:  5'- aCGCUCgguuucgCgGCGGAUCUcuucgGCgacgACGGGCGc -3'
miRNA:   3'- gGCGAGa------G-CGCCUAGG-----CGa---UGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.